Variant report

Variant	rs17198125
Chromosome Location	chr5:41049480-41049481
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12332614	0.82[YRI][hapmap]
rs61745464	0.96[EUR][1000 genomes]
rs7703074	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41049200-41049800	Enhancers	Small Intestine	intestine
2	chr5:41049200-41050000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:41049200-41050000	Enhancers	Gastric	stomach
4	chr5:41049200-41050000	Enhancers	Ovary	ovary
5	chr5:41049200-41050200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:41049400-41049600	Flanking Active TSS	Liver	Liver
7	chr5:41049400-41049800	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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