Variant report

Variant	rs12332614
Chromosome Location	chr5:41051533-41051534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10045129	0.83[ASN][1000 genomes]
rs10045132	0.83[ASN][1000 genomes]
rs10060627	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10067242	0.83[ASN][1000 genomes]
rs10473234	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12188046	0.83[ASN][1000 genomes]
rs17198125	0.82[YRI][hapmap]
rs60692342	0.92[EUR][1000 genomes]
rs6868654	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292804	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9654381	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9764586	1.00[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41050000-41052000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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