Variant report

Variant	rs10060627
Chromosome Location	chr5:41049155-41049156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10045129	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10045132	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10067242	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10067611	1.00[CEU][hapmap]
rs10076164	1.00[CEU][hapmap]
rs10473234	0.83[ASN][1000 genomes]
rs12188046	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12332614	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13154655	1.00[CEU][hapmap]
rs6868654	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9292804	0.83[ASN][1000 genomes]
rs9654381	0.83[ASN][1000 genomes]
rs9764586	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41048800-41049200	Weak transcription	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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