Variant report

Variant	rs17199066
Chromosome Location	chr9:104456693-104456694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10512283	1.00[ASN][1000 genomes]
rs10512284	1.00[ASN][1000 genomes]
rs10512286	1.00[ASN][1000 genomes]
rs10819954	1.00[ASN][1000 genomes]
rs10819955	1.00[ASN][1000 genomes]
rs10819956	1.00[ASN][1000 genomes]
rs10819958	1.00[ASN][1000 genomes]
rs10819959	1.00[ASN][1000 genomes]
rs10819961	1.00[ASN][1000 genomes]
rs10819977	1.00[ASN][1000 genomes]
rs10989572	1.00[ASN][1000 genomes]
rs10989592	1.00[ASN][1000 genomes]
rs10989594	1.00[ASN][1000 genomes]
rs10989596	1.00[ASN][1000 genomes]
rs10989597	1.00[ASN][1000 genomes]
rs10989598	1.00[ASN][1000 genomes]
rs10989605	0.92[ASN][1000 genomes]
rs12708308	1.00[ASN][1000 genomes]
rs1323427	1.00[ASN][1000 genomes]
rs13289501	1.00[ASN][1000 genomes]
rs1407873	1.00[ASN][1000 genomes]
rs1407874	1.00[ASN][1000 genomes]
rs1415643	1.00[CHB][hapmap]
rs17189562	1.00[JPT][hapmap]
rs17197124	1.00[ASN][1000 genomes]
rs1853447	1.00[ASN][1000 genomes]
rs2417291	1.00[ASN][1000 genomes]
rs34360878	1.00[ASN][1000 genomes]
rs34888126	0.92[ASN][1000 genomes]
rs35227408	1.00[ASN][1000 genomes]
rs35569161	0.92[ASN][1000 genomes]
rs4266702	1.00[ASN][1000 genomes]
rs4442195	1.00[ASN][1000 genomes]
rs4743484	0.92[ASN][1000 genomes]
rs55749212	0.92[ASN][1000 genomes]
rs56052939	0.92[ASN][1000 genomes]
rs6479060	1.00[ASN][1000 genomes]
rs72745355	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1046590	chr9:104450624-104848588	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104454800-104459400	Weak transcription	Psoas Muscle	Psoas
2	chr9:104455200-104457000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:104455600-104457200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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