Variant report

Variant	rs17202755
Chromosome Location	chr5:41264995-41264996
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2910644	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2921178	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs920909	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41263200-41265000	Enhancers	Duodenum Mucosa	Duodenum
2	chr5:41263200-41265000	Enhancers	Fetal Intestine Large	intestine
3	chr5:41263200-41265000	Enhancers	Fetal Lung	lung
4	chr5:41263400-41266800	Enhancers	Fetal Intestine Small	intestine
5	chr5:41264000-41267600	Weak transcription	Ovary	ovary
6	chr5:41264200-41265600	Enhancers	Small Intestine	intestine
7	chr5:41264400-41265200	Flanking Active TSS	Fetal Heart	heart
8	chr5:41264400-41270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:41264600-41269000	Weak transcription	Right Ventricle	heart
10	chr5:41264600-41270200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:41264800-41265000	Enhancers	Psoas Muscle	Psoas
12	chr5:41264800-41266600	Weak transcription	Right Atrium	heart
13	chr5:41264800-41270400	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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