Variant report

Variant	rs2921178
Chromosome Location	chr5:41264019-41264020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17202755	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2910644	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2921174	0.86[GIH][hapmap]
rs364539	0.81[CHB][hapmap]
rs380649	0.81[CHB][hapmap]
rs392077	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs399760	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs407963	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs412685	0.80[ASN][1000 genomes]
rs418697	0.80[ASN][1000 genomes]
rs420448	0.80[ASN][1000 genomes]
rs429017	0.81[CHB][hapmap]
rs4957150	0.82[GIH][hapmap]
rs920909	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2921178	FBXO4	cis	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41263000-41264400	Enhancers	Fetal Heart	heart
2	chr5:41263200-41265000	Enhancers	Duodenum Mucosa	Duodenum
3	chr5:41263200-41265000	Enhancers	Fetal Intestine Large	intestine
4	chr5:41263200-41265000	Enhancers	Fetal Lung	lung
5	chr5:41263400-41264800	Enhancers	Adipose Nuclei	Adipose
6	chr5:41263400-41264800	Enhancers	Stomach Mucosa	stomach
7	chr5:41263400-41266800	Enhancers	Fetal Intestine Small	intestine
8	chr5:41263600-41264800	Enhancers	Right Atrium	heart
9	chr5:41263800-41264400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:41263800-41264400	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr5:41263800-41264600	Enhancers	Right Ventricle	heart
12	chr5:41264000-41267600	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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