Variant report

Variant	rs17203855
Chromosome Location	chr5:41286128-41286129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17203435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17263342	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822823	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822824	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329665	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58056755	0.83[ASN][1000 genomes]
rs6451571	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451572	0.83[ASN][1000 genomes]
rs67121416	0.83[ASN][1000 genomes]
rs72755938	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755948	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959807	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv880314	chr5:41271606-41298726	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv1800575	chr5:41271985-41288302	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41283400-41286200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:41283400-41286200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:41283600-41286200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:41284600-41286200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:41285200-41286200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:41285400-41286200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr5:41285400-41286200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:41285400-41287600	Enhancers	Fetal Heart	heart
9	chr5:41285800-41286600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr5:41285800-41287400	Enhancers	Duodenum Mucosa	Duodenum
11	chr5:41286000-41286200	Enhancers	Aorta	Aorta
12	chr5:41286000-41286200	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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