Variant report

Variant	rs17210050
Chromosome Location	chr12:11809340-11809341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:11808714..11811317-chr12:11811716..11813257,2	K562	blood:
2	chr12:11808642..11810219-chr12:11833540..11835444,2	K562	blood:
3	chr12:11790830..11792844-chr12:11808167..11810511,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2541114	0.87[CEU][hapmap]
rs2856303	0.88[CEU][hapmap]
rs73286671	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870039	chr12:11800363-11996598	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17210050	ETV6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11803600-11809800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr12:11804200-11814000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:11804600-11810600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:11804800-11809800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr12:11806000-11809400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr12:11806000-11810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr12:11806000-11812800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:11806000-11813000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr12:11806000-11813600	Weak transcription	Fetal Intestine Large	intestine
10	chr12:11806000-11814200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:11806200-11809600	Enhancers	Primary B cells from peripheral blood	blood
12	chr12:11806200-11815800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr12:11806200-11816600	Weak transcription	Hela-S3	cervix
14	chr12:11806400-11809400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr12:11806400-11809400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr12:11806400-11809400	Weak transcription	A549	lung
17	chr12:11806400-11810200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr12:11806400-11810600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr12:11806400-11810600	Weak transcription	Brain Germinal Matrix	brain
20	chr12:11806400-11811400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr12:11806400-11811400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr12:11806400-11811400	Weak transcription	NHDF-Ad	bronchial
23	chr12:11806400-11811600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr12:11806400-11811800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr12:11806400-11813200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr12:11806400-11814000	Weak transcription	Colonic Mucosa	Colon
27	chr12:11806400-11815800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr12:11806600-11809400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr12:11806600-11810000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr12:11806600-11810000	Weak transcription	Osteobl	bone
31	chr12:11806600-11810200	Weak transcription	Primary T cells from cord blood	blood
32	chr12:11806600-11811400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr12:11806600-11811400	Weak transcription	HSMMtube	muscle
34	chr12:11806600-11811600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr12:11806600-11811800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr12:11806600-11811800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr12:11806600-11812000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr12:11806600-11813000	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr12:11806600-11813800	Weak transcription	Fetal Intestine Small	intestine
40	chr12:11806600-11814000	Weak transcription	Gastric	stomach
41	chr12:11806600-11814400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr12:11806600-11814400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr12:11806600-11814600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr12:11806600-11819200	Weak transcription	NHLF	lung
45	chr12:11806800-11809600	Weak transcription	NH-A	brain
46	chr12:11806800-11810600	Weak transcription	Aorta	Aorta
47	chr12:11806800-11811400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr12:11807000-11809800	Enhancers	Left Ventricle	heart
49	chr12:11807000-11811400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr12:11807000-11811800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links