Variant report

Variant	rs73286671
Chromosome Location	chr12:11807655-11807656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:11806163..11809108-chr12:11816910..11819098,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17210050	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870039	chr12:11800363-11996598	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11803600-11809800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr12:11804200-11814000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:11804400-11808000	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr12:11804600-11810600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr12:11804800-11809800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr12:11805000-11808800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:11805000-11809000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:11805200-11809200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:11805600-11809000	Weak transcription	NHEK	skin
10	chr12:11805800-11808000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:11805800-11808200	Enhancers	Spleen	Spleen
12	chr12:11805800-11808800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:11805800-11808800	Enhancers	Pancreas	Pancrea
14	chr12:11806000-11807800	Enhancers	Fetal Stomach	stomach
15	chr12:11806000-11808000	Enhancers	Lung	lung
16	chr12:11806000-11809400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr12:11806000-11810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr12:11806000-11812800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:11806000-11813000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr12:11806000-11813600	Weak transcription	Fetal Intestine Large	intestine
21	chr12:11806000-11814200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:11806200-11807800	Enhancers	Brain Substantia Nigra	brain
23	chr12:11806200-11808000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr12:11806200-11808000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr12:11806200-11808000	Enhancers	Psoas Muscle	Psoas
26	chr12:11806200-11808000	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr12:11806200-11808800	Enhancers	Fetal Muscle Leg	muscle
28	chr12:11806200-11809600	Enhancers	Primary B cells from peripheral blood	blood
29	chr12:11806200-11815800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr12:11806200-11816600	Weak transcription	Hela-S3	cervix
31	chr12:11806400-11807800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr12:11806400-11807800	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr12:11806400-11808000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr12:11806400-11808000	Enhancers	Primary T cells fromperipheralblood	blood
35	chr12:11806400-11808000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr12:11806400-11808000	Enhancers	Right Atrium	heart
37	chr12:11806400-11808200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr12:11806400-11808200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr12:11806400-11808400	Weak transcription	Fetal Kidney	kidney
40	chr12:11806400-11808400	Weak transcription	Stomach Mucosa	stomach
41	chr12:11806400-11808600	Enhancers	Rectal Smooth Muscle	rectum
42	chr12:11806400-11808800	Enhancers	Colon Smooth Muscle	Colon
43	chr12:11806400-11808800	Enhancers	Fetal Lung	lung
44	chr12:11806400-11809000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr12:11806400-11809200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr12:11806400-11809200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr12:11806400-11809200	Weak transcription	Placenta	Placenta
48	chr12:11806400-11809400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr12:11806400-11809400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr12:11806400-11809400	Weak transcription	A549	lung

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