Variant report

Variant	rs17210066
Chromosome Location	chr5:80343045-80343046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13170314	1.00[ASN][1000 genomes]
rs13187343	1.00[ASN][1000 genomes]
rs17211275	1.00[ASN][1000 genomes]
rs36084289	1.00[ASN][1000 genomes]
rs4703823	1.00[ASN][1000 genomes]
rs4704698	1.00[ASN][1000 genomes]
rs4704701	1.00[ASN][1000 genomes]
rs6869328	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv830358	chr5:80197105-80358920	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv830360	chr5:80283278-80446040	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80319600-80374200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr5:80332800-80343800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr5:80337200-80368600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:80337800-80355800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:80338200-80370600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:80338200-80376200	Weak transcription	NHLF	lung
7	chr5:80338400-80345400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr5:80339200-80368600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:80339600-80346400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:80339800-80355600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:80339800-80374200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr5:80340200-80345400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:80340400-80346000	Enhancers	Brain Substantia Nigra	brain
14	chr5:80340800-80344600	Enhancers	Brain Hippocampus Middle	brain
15	chr5:80341200-80348000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr5:80341200-80356000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:80341400-80357400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr5:80341400-80360000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr5:80341800-80343600	Weak transcription	Brain Anterior Caudate	brain
20	chr5:80342000-80343200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:80342000-80343600	Enhancers	Brain Angular Gyrus	brain
22	chr5:80342200-80344600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr5:80342600-80344400	Enhancers	Brain Cingulate Gyrus	brain
24	chr5:80342800-80343800	Genic enhancers	HepG2	liver
25	chr5:80343000-80344000	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links