Variant report

Variant	rs36084289
Chromosome Location	chr5:80448546-80448547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13170314	1.00[ASN][1000 genomes]
rs13187343	1.00[ASN][1000 genomes]
rs17210066	1.00[ASN][1000 genomes]
rs17211275	1.00[ASN][1000 genomes]
rs34607174	1.00[ASN][1000 genomes]
rs4703823	1.00[ASN][1000 genomes]
rs4704698	1.00[ASN][1000 genomes]
rs4704701	1.00[ASN][1000 genomes]
rs6869328	1.00[ASN][1000 genomes]
rs73766218	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1025799	chr5:80436584-80485252	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80423000-80451400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr5:80436800-80448600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:80442200-80460800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:80442200-80465600	Weak transcription	HepG2	liver
5	chr5:80444000-80451400	Weak transcription	Ovary	ovary
6	chr5:80444000-80457000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:80444400-80448600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:80444400-80449200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:80444400-80451200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:80444400-80451200	Weak transcription	Brain Hippocampus Middle	brain
11	chr5:80444400-80451400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr5:80444400-80451400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr5:80445800-80448800	Strong transcription	Primary T cells from cord blood	blood
14	chr5:80446200-80451600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:80446200-80466000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:80448400-80448600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:80448400-80449200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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