Variant report

Variant	rs17214357
Chromosome Location	chr4:76481497-76481498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56077015	1.00[AFR][1000 genomes]
rs62318615	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76480400-76481800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:76480400-76481800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:76480600-76481600	Enhancers	Primary B cells from peripheral blood	blood
4	chr4:76480600-76481600	Flanking Active TSS	GM12878-XiMat	blood
5	chr4:76480600-76481800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr4:76480600-76482200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:76480600-76482400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:76480800-76481600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:76480800-76481600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:76480800-76481600	Flanking Active TSS	NH-A	brain
11	chr4:76480800-76481800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:76480800-76481800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:76481000-76481600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr4:76481200-76481600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:76481200-76481800	Enhancers	NHEK	skin
16	chr4:76481400-76481600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr4:76481400-76481600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr4:76481400-76481600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:76481400-76481800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:76481400-76481800	Enhancers	HMEC	breast
21	chr4:76481400-76482200	Weak transcription	Placenta	Placenta
22	chr4:76481400-76486800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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