Variant report

Variant	rs17216545
Chromosome Location	chr3:56135739-56135740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10461036	0.91[ASN][1000 genomes]
rs10510779	0.95[ASN][1000 genomes]
rs10510780	0.95[ASN][1000 genomes]
rs10510781	0.95[ASN][1000 genomes]
rs11428238	0.96[ASN][1000 genomes]
rs17235263	0.96[ASN][1000 genomes]
rs17235291	0.97[ASN][1000 genomes]
rs17235305	0.99[ASN][1000 genomes]
rs17235375	0.99[ASN][1000 genomes]
rs17288707	0.82[ASN][1000 genomes]
rs17825183	0.96[ASN][1000 genomes]
rs17825189	0.97[ASN][1000 genomes]
rs17825207	1.00[ASN][1000 genomes]
rs17825213	1.00[ASN][1000 genomes]
rs17825278	0.99[ASN][1000 genomes]
rs35563958	0.93[ASN][1000 genomes]
rs58375176	0.95[ASN][1000 genomes]
rs59550330	0.85[ASN][1000 genomes]
rs61401343	0.91[ASN][1000 genomes]
rs73091011	0.93[ASN][1000 genomes]
rs73091012	0.93[ASN][1000 genomes]
rs73091207	0.97[ASN][1000 genomes]
rs73091236	0.95[ASN][1000 genomes]
rs9811060	0.81[ASN][1000 genomes]
rs9828337	0.81[ASN][1000 genomes]
rs9883636	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56131800-56136000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:56135200-56136400	Enhancers	HUVEC	blood vessel
3	chr3:56135400-56136600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:56135600-56136600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:56135600-56137200	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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