Variant report

Variant	rs17288707
Chromosome Location	chr3:56180888-56180889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17216545	0.82[ASN][1000 genomes]
rs17235305	0.81[ASN][1000 genomes]
rs17235375	0.83[ASN][1000 genomes]
rs17825207	0.82[ASN][1000 genomes]
rs17825213	0.82[ASN][1000 genomes]
rs17825278	0.83[ASN][1000 genomes]
rs59550330	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73091236	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56168800-56182400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:56180600-56181600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56180800-56181600	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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