Variant report
| Variant | rs17216657 |
|---|---|
| Chromosome Location | chr3:56574431-56574432 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:56572461..56575309-chr3:56590695..56592695,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000180376 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11130525 | 0.82[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs11130526 | 0.86[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs11719707 | 0.82[CHB][hapmap] |
| rs1316647 | 0.83[CHB][hapmap] |
| rs13317989 | 0.82[CHB][hapmap] |
| rs1388256 | 0.82[CHB][hapmap] |
| rs1491161 | 0.83[AMR][1000 genomes] |
| rs17216650 | 0.84[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17216747 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17288852 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1907458 | 0.88[AMR][1000 genomes] |
| rs2291498 | 0.82[CHB][hapmap] |
| rs2291500 | 0.83[CHB][hapmap] |
| rs282525 | 0.82[CHB][hapmap] |
| rs282530 | 0.82[CHB][hapmap] |
| rs3172355 | 0.82[CHB][hapmap] |
| rs3732505 | 0.82[CHB][hapmap] |
| rs4681726 | 0.82[CHB][hapmap] |
| rs4681903 | 0.83[CHB][hapmap] |
| rs55865922 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs55960262 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs56006703 | 0.81[EUR][1000 genomes] |
| rs56126040 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs56356916 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62255964 | 0.85[ASN][1000 genomes] |
| rs6556 | 0.83[CHB][hapmap] |
| rs6767903 | 0.89[CHB][hapmap] |
| rs6798667 | 0.88[AMR][1000 genomes] |
| rs7612464 | 0.82[CHB][hapmap] |
| rs9311609 | 0.82[CHB][hapmap] |
| rs953540 | 0.83[CHB][hapmap] |
| rs9832626 | 0.88[AMR][1000 genomes] |
| rs9847362 | 0.82[CHB][hapmap] |
| rs9871265 | 0.83[CHB][hapmap] |
| rs9872059 | 0.82[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3347557 | chr3:56466500-56619322 | Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv876817 | chr3:56517253-56649282 | Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
