Variant report

Variant	rs17216747
Chromosome Location	chr3:56687851-56687852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56685409..56688406-chr3:56693348..56695126,2	MCF-7	breast:
2	chr3:56687453..56689403-chr3:56716785..56718913,2	K562	blood:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10222629	0.87[ASN][1000 genomes]
rs1054092	0.83[ASN][1000 genomes]
rs1054093	0.83[ASN][1000 genomes]
rs11130525	0.82[CHB][hapmap]
rs11130526	0.86[CHB][hapmap]
rs11712664	0.81[ASN][1000 genomes]
rs11719707	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs11719726	0.87[ASN][1000 genomes]
rs1316647	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs13317989	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs1388256	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs1565378	0.81[ASN][1000 genomes]
rs17216657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17288852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1873256	0.81[ASN][1000 genomes]
rs2291498	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs2291500	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs2317132	0.83[ASN][1000 genomes]
rs282525	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs282530	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs282531	0.83[ASN][1000 genomes]
rs3172355	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs3732505	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs4681726	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs4681903	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs4681937	0.87[ASN][1000 genomes]
rs4681955	0.87[ASN][1000 genomes]
rs55742226	0.87[ASN][1000 genomes]
rs55828519	0.82[ASN][1000 genomes]
rs55865922	0.86[ASN][1000 genomes]
rs55960262	0.84[ASN][1000 genomes]
rs56126040	0.86[ASN][1000 genomes]
rs56263252	0.87[ASN][1000 genomes]
rs56356916	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62251234	0.83[ASN][1000 genomes]
rs6445811	0.87[ASN][1000 genomes]
rs6445812	0.87[ASN][1000 genomes]
rs6556	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs6767903	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs6794450	0.86[ASN][1000 genomes]
rs7612464	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs7633478	0.86[ASN][1000 genomes]
rs7641898	0.83[ASN][1000 genomes]
rs7645941	0.83[ASN][1000 genomes]
rs7647095	0.83[ASN][1000 genomes]
rs7648297	0.83[ASN][1000 genomes]
rs7649872	0.87[ASN][1000 genomes]
rs873840	0.81[ASN][1000 genomes]
rs9311609	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs9311612	0.83[ASN][1000 genomes]
rs953540	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs9809117	0.86[ASN][1000 genomes]
rs9816100	0.87[ASN][1000 genomes]
rs9816265	0.87[ASN][1000 genomes]
rs9819952	0.87[ASN][1000 genomes]
rs9826788	0.86[ASN][1000 genomes]
rs9830377	0.84[ASN][1000 genomes]
rs9834239	0.86[ASN][1000 genomes]
rs9835134	0.83[ASN][1000 genomes]
rs9841851	0.81[ASN][1000 genomes]
rs9847362	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs9861577	0.83[ASN][1000 genomes]
rs9864701	0.87[ASN][1000 genomes]
rs9867302	0.87[ASN][1000 genomes]
rs9868059	0.87[ASN][1000 genomes]
rs9871265	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs9872059	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs9883842	0.87[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
7	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
9	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:56664000-56688000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:56664000-56694800	Weak transcription	Stomach Mucosa	stomach
12	chr3:56664800-56711000	Strong transcription	Dnd41	blood
13	chr3:56665000-56690400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:56665200-56691800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:56665200-56698800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr3:56665200-56707200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr3:56668000-56688600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:56668000-56707200	Strong transcription	Placenta	Placenta
21	chr3:56669600-56703800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:56675600-56702200	Weak transcription	K562	blood
23	chr3:56675800-56688600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:56675800-56688800	Weak transcription	Aorta	Aorta
25	chr3:56675800-56691600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:56675800-56691600	Weak transcription	HSMMtube	muscle
27	chr3:56675800-56691800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:56675800-56692400	Weak transcription	Right Ventricle	heart
29	chr3:56675800-56693400	Weak transcription	Colonic Mucosa	Colon
30	chr3:56675800-56695200	Weak transcription	Gastric	stomach
31	chr3:56675800-56707000	Weak transcription	Esophagus	oesophagus
32	chr3:56675800-56716200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr3:56676000-56705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:56677000-56696600	Strong transcription	Fetal Muscle Trunk	muscle
35	chr3:56677200-56705400	Strong transcription	Primary T cells from cord blood	blood
36	chr3:56677800-56688000	Strong transcription	Primary hematopoietic stem cells	blood
37	chr3:56678000-56690200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:56678200-56690400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:56678400-56690000	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr3:56678400-56690200	Strong transcription	Primary B cells from cord blood	blood
41	chr3:56679000-56688600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:56680400-56692600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr3:56680800-56691600	Weak transcription	Brain Angular Gyrus	brain
44	chr3:56682200-56688600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr3:56682200-56688600	Weak transcription	NHEK	skin
46	chr3:56682400-56688600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr3:56682400-56694000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr3:56682800-56688600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:56682800-56688600	Weak transcription	Brain Germinal Matrix	brain
50	chr3:56683200-56688600	Weak transcription	Muscle Satellite Cultured Cells	--

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