Variant report

Variant	rs17231932
Chromosome Location	chr6:23797357-23797358
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10806976	0.85[EUR][1000 genomes]
rs1325014	0.83[EUR][1000 genomes]
rs1325025	0.86[EUR][1000 genomes]
rs1325029	0.87[EUR][1000 genomes]
rs1886562	0.85[CEU][hapmap]
rs4331975	0.83[EUR][1000 genomes]
rs4339446	0.83[EUR][1000 genomes]
rs4355604	0.84[EUR][1000 genomes]
rs4631271	0.83[EUR][1000 genomes]
rs6939526	0.87[EUR][1000 genomes]
rs6939972	0.83[EUR][1000 genomes]
rs7770775	0.85[CEU][hapmap]
rs9295599	0.86[EUR][1000 genomes]
rs9366525	0.83[EUR][1000 genomes]
rs9366526	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23796000-23797800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:23796600-23797800	Enhancers	Brain Germinal Matrix	brain
3	chr6:23797200-23797800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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