Variant report

Variant	rs6939972
Chromosome Location	chr6:23775353-23775354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10806976	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1325014	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1325025	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1325029	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1555761	0.85[AMR][1000 genomes]
rs1555763	0.83[AMR][1000 genomes]
rs1555766	0.83[AMR][1000 genomes]
rs17231932	0.83[EUR][1000 genomes]
rs1886562	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[AMR][1000 genomes]
rs1886564	0.90[AMR][1000 genomes]
rs1925199	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1925201	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2147700	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2181939	0.84[AMR][1000 genomes]
rs2328789	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2328790	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4331975	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4337927	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4339446	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4355604	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4631271	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6939526	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7755256	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7770775	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9295599	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9348589	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9348590	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9366525	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9366526	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9393452	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9393453	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1027773	chr6:23644898-23776497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030174	chr6:23743412-23776497	Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2755115	chr6:23743412-23790212	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1025078	chr6:23753085-23776497	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv527726	chr6:23762391-23775595	Enhancers	n/a	n/a	inside rSNPs	n/a
8	nsv1022846	chr6:23765651-23776497	Enhancers	n/a	n/a	inside rSNPs	n/a
9	nsv432855	chr6:23765651-23790212	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23774600-23775600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:23775200-23775800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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