Variant report

Variant	rs17235306
Chromosome Location	chr13:96189927-96189928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12583339	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585702	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12870793	0.84[JPT][hapmap]
rs2277421	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35195129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71433089	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9556488	0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9561897	0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96183000-96192800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:96186400-96193000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:96188000-96190000	Weak transcription	Stomach Mucosa	stomach
4	chr13:96188000-96193200	Weak transcription	Esophagus	oesophagus
5	chr13:96188000-96193200	Weak transcription	Psoas Muscle	Psoas
6	chr13:96188000-96199600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:96188200-96190600	Weak transcription	Pancreas	Pancrea
8	chr13:96188200-96193000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:96188200-96193000	Weak transcription	HSMM	muscle
10	chr13:96188200-96193200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:96188200-96193200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:96188400-96198800	Weak transcription	Hela-S3	cervix
13	chr13:96189000-96192800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:96189000-96192800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr13:96189000-96193200	Weak transcription	HUVEC	blood vessel
16	chr13:96189200-96190200	Active TSS	Fetal Muscle Trunk	muscle
17	chr13:96189200-96190400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr13:96189400-96190200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr13:96189400-96192800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr13:96189400-96192800	Weak transcription	HSMMtube	muscle
21	chr13:96189400-96193200	Weak transcription	Fetal Lung	lung
22	chr13:96189600-96192600	Weak transcription	Fetal Muscle Leg	muscle
23	chr13:96189600-96198800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr13:96189800-96193000	Weak transcription	Fetal Kidney	kidney
25	chr13:96189800-96193000	Weak transcription	A549	lung
26	chr13:96189800-96193200	Weak transcription	Brain Anterior Caudate	brain
27	chr13:96189800-96199000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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