Variant report

Variant	rs35195129
Chromosome Location	chr13:96188698-96188699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr13:96188640-96188790	HFF	foreskin:	n/a	n/a
2	RAD21	chr13:96188697-96189430	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
CLDN10-AS1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12583339	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585702	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277421	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71433089	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9556488	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9561897	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96183000-96188800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr13:96183000-96192800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:96185800-96189000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:96185800-96189000	Enhancers	HepG2	liver
5	chr13:96185800-96189000	Enhancers	HUVEC	blood vessel
6	chr13:96186000-96189000	Enhancers	Osteobl	bone
7	chr13:96186200-96189400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr13:96186400-96188800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:96186400-96188800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:96186400-96188800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:96186400-96188800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr13:96186400-96188800	Weak transcription	Fetal Kidney	kidney
13	chr13:96186400-96189400	Enhancers	NH-A	brain
14	chr13:96186400-96193000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr13:96186600-96189600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr13:96187000-96188800	Enhancers	HMEC	breast
17	chr13:96187000-96189000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:96187400-96188800	Weak transcription	Brain Anterior Caudate	brain
19	chr13:96187400-96189000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr13:96187600-96189200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr13:96187600-96189400	Enhancers	HSMMtube	muscle
22	chr13:96188000-96190000	Weak transcription	Stomach Mucosa	stomach
23	chr13:96188000-96193200	Weak transcription	Esophagus	oesophagus
24	chr13:96188000-96193200	Weak transcription	Psoas Muscle	Psoas
25	chr13:96188000-96199600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr13:96188200-96188800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr13:96188200-96189400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr13:96188200-96189800	Enhancers	A549	lung
29	chr13:96188200-96190600	Weak transcription	Pancreas	Pancrea
30	chr13:96188200-96193000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr13:96188200-96193000	Weak transcription	HSMM	muscle
32	chr13:96188200-96193200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr13:96188200-96193200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr13:96188400-96198800	Weak transcription	Hela-S3	cervix

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