Variant report

Variant	rs17238684
Chromosome Location	chr15:56659450-56659451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56535922..56537613-chr15:56658440..56660656,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs12437466	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12438014	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438053	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438534	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438630	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438717	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438761	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438788	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439039	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439083	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439088	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439133	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12439245	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439453	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439673	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439999	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440577	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440764	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440913	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441000	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441143	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441149	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441182	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441309	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441438	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441707	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441874	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442236	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442599	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442602	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442951	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443042	1.00[CEU][hapmap]
rs12443053	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443087	0.82[CEU][hapmap]
rs12443139	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443204	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443402	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443459	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443477	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443486	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12911002	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1402173	1.00[CEU][hapmap]
rs16976787	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16976793	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16976808	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16976824	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16976919	1.00[CEU][hapmap]
rs17238663	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17238740	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17238747	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819426	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819450	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819473	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819485	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17819509	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17819515	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2162216	0.82[CEU][hapmap]
rs2681977	0.82[CEU][hapmap]
rs2718927	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3858883	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177904	1.00[CEU][hapmap]
rs7180561	1.00[ASN][1000 genomes]
rs7181011	1.00[ASN][1000 genomes]
rs8023554	0.82[CEU][hapmap]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56656800-56659600	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr15:56657000-56659600	Active TSS	Fetal Brain Female	brain
3	chr15:56657200-56663200	Active TSS	GM12878-XiMat	blood
4	chr15:56657400-56659600	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr15:56657400-56659800	Active TSS	Duodenum Mucosa	Duodenum
6	chr15:56658000-56662800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:56658200-56659800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:56658200-56661400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:56658200-56661400	Weak transcription	Small Intestine	intestine
10	chr15:56658200-56675400	Weak transcription	Pancreas	Pancrea
11	chr15:56658400-56659800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:56658400-56660000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:56658600-56659600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr15:56658600-56659600	Enhancers	HepG2	liver
15	chr15:56658600-56660400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:56658800-56659600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr15:56658800-56659600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:56658800-56659600	Enhancers	Fetal Intestine Small	intestine
19	chr15:56658800-56659600	Enhancers	A549	lung
20	chr15:56658800-56659800	Active TSS	Brain Anterior Caudate	brain
21	chr15:56658800-56659800	Enhancers	Hela-S3	cervix
22	chr15:56658800-56660000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr15:56658800-56661200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:56658800-56661200	Weak transcription	HMEC	breast
25	chr15:56658800-56661400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr15:56658800-56661400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:56658800-56661400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr15:56658800-56669600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:56659000-56659600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr15:56659000-56659800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:56659000-56659800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:56659000-56661400	Weak transcription	NHEK	skin
33	chr15:56659200-56659600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr15:56659200-56659600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr15:56659200-56659600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr15:56659200-56659800	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr15:56659400-56659600	Enhancers	Fetal Brain Male	brain
38	chr15:56659400-56659800	Active TSS	Brain Germinal Matrix	brain
39	chr15:56659400-56666800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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