Variant report

Variant	rs1402173
Chromosome Location	chr15:56650678-56650679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56648882..56652166-chr15:56656839..56659140,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10220822	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10444835	1.00[CEU][hapmap]
rs10518839	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10518843	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10851607	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11071253	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs11071265	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11488881	0.89[ASN][1000 genomes]
rs11629674	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs11632087	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs11632091	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs11637789	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs12437466	1.00[CEU][hapmap]
rs12437864	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs12438534	1.00[CEU][hapmap]
rs12438630	1.00[CEU][hapmap]
rs12438639	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12439133	1.00[CEU][hapmap]
rs12439245	1.00[CEU][hapmap]
rs12439682	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs12440495	1.00[CEU][hapmap]
rs12440577	1.00[CEU][hapmap]
rs12440898	1.00[CEU][hapmap]
rs12441182	1.00[CEU][hapmap]
rs12441309	1.00[CEU][hapmap]
rs12441438	1.00[CEU][hapmap]
rs12442539	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs12443042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12443087	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12443429	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs12443486	1.00[CEU][hapmap]
rs12591303	0.90[CHB][hapmap]
rs12592096	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs12593348	0.97[ASN][1000 genomes]
rs12593453	0.92[ASN][1000 genomes]
rs12593569	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs12594941	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12595557	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs12595840	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1426065	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976787	1.00[CEU][hapmap]
rs16976788	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs16976793	1.00[CEU][hapmap]
rs16976808	1.00[CEU][hapmap]
rs16976824	1.00[CEU][hapmap]
rs16976847	1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs16976919	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs17238684	1.00[CEU][hapmap]
rs17238740	1.00[CEU][hapmap]
rs17819426	1.00[CEU][hapmap]
rs17819450	1.00[CEU][hapmap]
rs17819473	1.00[CEU][hapmap]
rs1863427	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1879344	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs1879347	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs1879348	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1879349	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2162216	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2263567	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2681977	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs2682045	0.83[CHB][hapmap]
rs2718906	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2718927	1.00[CEU][hapmap]
rs2725842	0.92[AMR][1000 genomes]
rs28408704	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28858412	0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3759868	0.85[CHB][hapmap]
rs3858883	1.00[CEU][hapmap]
rs4142479	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs58619937	0.80[ASN][1000 genomes]
rs58851049	0.87[ASN][1000 genomes]
rs59232912	0.87[ASN][1000 genomes]
rs60861096	0.92[ASN][1000 genomes]
rs7177904	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs764014	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs8023554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56637800-56657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56644000-56656800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:56649600-56656800	Weak transcription	HMEC	breast

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