Variant report

Variant	rs1426065
Chromosome Location	chr15:56647818-56647819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10220822	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10444835	1.00[CEU][hapmap]
rs10518839	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs10518843	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10851607	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11071253	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs11071265	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11488881	0.89[ASN][1000 genomes]
rs11629674	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs11632087	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs11632091	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs11637789	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs12437466	1.00[CEU][hapmap]
rs12437864	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs12438525	1.00[CEU][hapmap]
rs12438534	1.00[CEU][hapmap]
rs12438630	1.00[CEU][hapmap]
rs12438639	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12439133	1.00[CEU][hapmap]
rs12439245	1.00[CEU][hapmap]
rs12439682	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs12440495	1.00[CEU][hapmap]
rs12440577	1.00[CEU][hapmap]
rs12440898	1.00[CEU][hapmap]
rs12441182	1.00[CEU][hapmap]
rs12441309	1.00[CEU][hapmap]
rs12441438	1.00[CEU][hapmap]
rs12442539	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs12443042	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12443087	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12443429	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs12443486	1.00[CEU][hapmap]
rs12591303	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs12592096	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs12593348	0.97[ASN][1000 genomes]
rs12593453	0.92[ASN][1000 genomes]
rs12593569	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs12594941	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap]
rs12595557	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs12595840	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1402173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976787	1.00[CEU][hapmap]
rs16976788	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs16976793	1.00[CEU][hapmap]
rs16976808	1.00[CEU][hapmap]
rs16976824	1.00[CEU][hapmap]
rs16976847	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs16976919	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17238684	1.00[CEU][hapmap]
rs17238740	1.00[CEU][hapmap]
rs17819426	1.00[CEU][hapmap]
rs17819450	1.00[CEU][hapmap]
rs17819473	1.00[CEU][hapmap]
rs1863427	0.96[ASN][1000 genomes]
rs1879344	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs1879347	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs1879348	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1879349	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs2162216	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2263567	0.94[ASN][1000 genomes]
rs2681977	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs2682045	0.81[CHB][hapmap]
rs2718906	0.89[ASN][1000 genomes]
rs2718927	1.00[CEU][hapmap]
rs2725842	0.90[AMR][1000 genomes]
rs28408704	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28858412	0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3759868	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs3858883	1.00[CEU][hapmap]
rs4142479	0.94[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs58619937	0.80[ASN][1000 genomes]
rs58851049	0.87[ASN][1000 genomes]
rs59232912	0.87[ASN][1000 genomes]
rs60861096	0.92[ASN][1000 genomes]
rs7177904	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs764014	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs8023554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56637800-56657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56644000-56656800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:56644400-56648200	Weak transcription	HSMMtube	muscle
4	chr15:56646200-56648200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:56646200-56648600	Weak transcription	HSMM	muscle
6	chr15:56646400-56648600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:56646600-56648200	Weak transcription	Osteobl	bone
8	chr15:56646600-56648400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:56646600-56648600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:56646600-56648600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:56646600-56648800	Weak transcription	NHDF-Ad	bronchial
12	chr15:56646800-56648400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:56647800-56650600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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