Variant report

Variant	rs10444835
Chromosome Location	chr15:56454563-56454564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56448755..56450713-chr15:56452777..56455848,3	K562	blood:
2	chr15:56452674..56455465-chr15:56458402..56460158,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11071244	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11071248	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11071251	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11071256	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437466	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12438262	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438452	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438525	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438606	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438670	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439033	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439133	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440495	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440509	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440898	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441580	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443028	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12443486	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1402173	1.00[CEU][hapmap]
rs16976721	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976722	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976737	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976776	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976787	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976793	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976808	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16976820	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16976824	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718927	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28895323	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4310793	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56798454	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7180561	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7181011	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv1811079	chr15:56448125-56462293	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56433800-56464000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:56435200-56458800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:56435400-56461000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:56435400-56462400	Weak transcription	Fetal Thymus	thymus
5	chr15:56435400-56465200	Weak transcription	Thymus	Thymus
6	chr15:56436000-56458000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:56436400-56455800	Weak transcription	Liver	Liver
8	chr15:56436600-56458800	Weak transcription	Primary B cells from cord blood	blood
9	chr15:56441000-56461400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:56442000-56457200	Weak transcription	HMEC	breast
11	chr15:56442000-56458000	Weak transcription	HepG2	liver
12	chr15:56442000-56462600	Weak transcription	HSMM	muscle
13	chr15:56442200-56457200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:56442600-56470600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:56442800-56462600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:56443200-56462600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:56446600-56468400	Weak transcription	Fetal Lung	lung
18	chr15:56447600-56457800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:56447800-56455800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr15:56448000-56456400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:56448200-56458000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr15:56448400-56460200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:56448600-56457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:56449400-56458400	Weak transcription	Dnd41	blood
25	chr15:56450800-56455200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:56451200-56458200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:56451600-56455400	Weak transcription	GM12878-XiMat	blood
28	chr15:56452200-56457000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:56452200-56460800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr15:56452400-56454600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:56452400-56456200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:56452400-56457800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:56452400-56458800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:56452400-56458800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:56452600-56454600	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr15:56452800-56457000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:56453000-56460800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:56453000-56463200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:56453000-56479600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:56453200-56462000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:56453200-56465000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr15:56453400-56454600	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr15:56453400-56457600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr15:56453400-56463400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:56453600-56457600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:56453600-56515000	Weak transcription	NHLF	lung
47	chr15:56453800-56454600	Enhancers	Brain Substantia Nigra	brain
48	chr15:56453800-56463000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:56454000-56454600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr15:56454000-56454600	Enhancers	Brain Anterior Caudate	brain

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