The 2.0 version of rSNPBase

Variant report

Variant rs1879348
Chromosome Location chr15:56484928-56484929
allele C/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:56453600-56515000 Weak transcription NHLF lung
2 chr15:56457400-56500400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr15:56458400-56496200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr15:56459200-56511000 Weak transcription Esophagus oesophagus
5 chr15:56463600-56496600 Weak transcription NHEK skin
6 chr15:56464600-56497800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr15:56465000-56486200 Weak transcription Osteobl bone
8 chr15:56465400-56496600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr15:56465800-56496000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr15:56465800-56496600 Weak transcription HMEC breast
11 chr15:56466000-56497000 Weak transcription HSMMtube muscle
12 chr15:56466000-56500000 Weak transcription Thymus Thymus
13 chr15:56466000-56514200 Weak transcription Duodenum Mucosa Duodenum
14 chr15:56466200-56494800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr15:56466400-56495400 Weak transcription Fetal Stomach stomach
16 chr15:56466800-56494600 Weak transcription Fetal Intestine Large intestine
17 chr15:56467000-56500400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr15:56467000-56511600 Weak transcription Fetal Intestine Small intestine
19 chr15:56469600-56491400 Weak transcription A549 lung
20 chr15:56470200-56498800 Weak transcription Dnd41 blood
21 chr15:56470800-56496400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr15:56470800-56503800 Weak transcription Fetal Lung lung
23 chr15:56471000-56485200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr15:56474200-56495000 Weak transcription K562 blood
25 chr15:56476600-56496200 Weak transcription Primary monocytes fromperipheralblood blood
26 chr15:56477000-56495800 Weak transcription Primary B cells from cord blood blood
27 chr15:56477000-56500400 Weak transcription Liver Liver
28 chr15:56477200-56497000 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr15:56479000-56485000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr15:56479800-56496200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
31 chr15:56480000-56495000 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr15:56480000-56496200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
33 chr15:56480000-56496600 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr15:56480000-56500000 Weak transcription Primary T cells fromperipheralblood blood
35 chr15:56480200-56494600 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr15:56480200-56497000 Weak transcription HUVEC blood vessel
37 chr15:56480200-56515400 Weak transcription Hela-S3 cervix
38 chr15:56480800-56489800 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr15:56480800-56492600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr15:56480800-56496200 Weak transcription Primary T helper naive cells from peripheral blood blood
41 chr15:56481000-56485400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr15:56481400-56487800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr15:56481400-56497800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr15:56481600-56485400 Weak transcription Pancreas Pancrea
45 chr15:56482400-56485200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr15:56482600-56497000 Weak transcription NH-A brain
47 chr15:56482600-56500200 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr15:56482800-56489200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr15:56483000-56491400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr15:56483000-56491600 Weak transcription Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015