Variant report

Variant	rs1031077
Chromosome Location	chr15:56434050-56434051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 186 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:184)

rs_ID	r²[population]
rs10518839	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs10518842	0.94[ASN][1000 genomes]
rs10518843	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs10851601	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10851603	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10851604	0.89[ASN][1000 genomes]
rs11071245	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11071246	0.90[ASN][1000 genomes]
rs11071250	0.88[ASN][1000 genomes]
rs11071252	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11071253	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs11071254	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11071255	0.89[ASN][1000 genomes]
rs11629674	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs11629809	0.89[ASN][1000 genomes]
rs11630394	0.89[ASN][1000 genomes]
rs11631518	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs11631910	0.89[ASN][1000 genomes]
rs11631915	0.85[ASN][1000 genomes]
rs11632023	0.92[ASN][1000 genomes]
rs11632081	0.89[ASN][1000 genomes]
rs11632087	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs11632091	0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs11632394	0.89[ASN][1000 genomes]
rs11632619	0.89[ASN][1000 genomes]
rs11634404	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs11634455	0.93[ASN][1000 genomes]
rs11634689	0.88[ASN][1000 genomes]
rs11636035	0.89[ASN][1000 genomes]
rs11636040	0.84[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs11637507	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11637515	0.89[ASN][1000 genomes]
rs11637789	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11637998	0.89[ASN][1000 genomes]
rs11638709	0.94[ASN][1000 genomes]
rs12437864	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12439682	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12439907	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12440142	0.84[EUR][1000 genomes]
rs12442539	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12443118	0.92[ASN][1000 genomes]
rs12443429	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12591093	0.89[ASN][1000 genomes]
rs12591151	0.85[ASN][1000 genomes]
rs12591236	0.92[ASN][1000 genomes]
rs12591270	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12591294	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12591980	0.94[ASN][1000 genomes]
rs12592096	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12592130	0.92[ASN][1000 genomes]
rs12592449	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12592690	0.81[ASN][1000 genomes]
rs12592881	0.87[ASN][1000 genomes]
rs12592899	0.88[ASN][1000 genomes]
rs12593096	0.89[ASN][1000 genomes]
rs12593439	0.87[ASN][1000 genomes]
rs12593569	0.89[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs12593713	0.89[ASN][1000 genomes]
rs12593752	0.94[ASN][1000 genomes]
rs12594038	0.87[ASN][1000 genomes]
rs12594103	0.92[ASN][1000 genomes]
rs12594121	0.89[ASN][1000 genomes]
rs12594245	0.94[ASN][1000 genomes]
rs12594860	0.94[ASN][1000 genomes]
rs12594908	0.92[ASN][1000 genomes]
rs12594941	0.89[CHB][hapmap];1.00[YRI][hapmap]
rs12595072	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs12595323	0.89[ASN][1000 genomes]
rs12595366	0.92[ASN][1000 genomes]
rs12595428	0.88[ASN][1000 genomes]
rs12595490	0.86[ASN][1000 genomes]
rs12595496	0.86[ASN][1000 genomes]
rs12595557	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs12595649	0.94[ASN][1000 genomes]
rs12595690	0.86[ASN][1000 genomes]
rs12595840	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1550586	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs16976734	0.91[LWK][hapmap];0.85[YRI][hapmap]
rs16976760	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16976788	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16976792	0.94[ASN][1000 genomes]
rs16976801	0.94[ASN][1000 genomes]
rs16976810	0.94[ASN][1000 genomes]
rs16976821	0.94[ASN][1000 genomes]
rs16976826	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16976831	0.89[ASN][1000 genomes]
rs16976832	0.89[ASN][1000 genomes]
rs16976847	0.89[CHB][hapmap];1.00[YRI][hapmap]
rs17841131	0.94[ASN][1000 genomes]
rs1867089	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs1879344	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs1879345	0.94[ASN][1000 genomes]
rs1879347	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs1879348	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1879349	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs2414465	0.89[ASN][1000 genomes]
rs2414467	0.89[ASN][1000 genomes]
rs2414468	0.89[ASN][1000 genomes]
rs2414471	0.90[ASN][1000 genomes]
rs2414472	0.90[ASN][1000 genomes]
rs2682045	0.81[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs2718930	0.94[CEU][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]
rs2899596	0.94[ASN][1000 genomes]
rs2899597	0.94[ASN][1000 genomes]
rs34383693	0.83[ASN][1000 genomes]
rs34401800	0.92[ASN][1000 genomes]
rs35371323	0.88[ASN][1000 genomes]
rs35607436	0.89[ASN][1000 genomes]
rs3803459	0.85[ASN][1000 genomes]
rs4142481	0.83[ASN][1000 genomes]
rs4351994	0.83[ASN][1000 genomes]
rs4363812	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55942364	0.89[ASN][1000 genomes]
rs55946012	0.81[ASN][1000 genomes]
rs55957636	0.89[ASN][1000 genomes]
rs56083605	0.89[ASN][1000 genomes]
rs56156930	0.94[ASN][1000 genomes]
rs56215018	0.89[ASN][1000 genomes]
rs56398703	0.88[ASN][1000 genomes]
rs58036957	0.82[ASN][1000 genomes]
rs58084889	0.85[ASN][1000 genomes]
rs58265497	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58934221	0.89[ASN][1000 genomes]
rs59025920	0.92[ASN][1000 genomes]
rs59230019	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60210425	0.94[ASN][1000 genomes]
rs60417530	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61072507	0.83[ASN][1000 genomes]
rs61270078	0.90[ASN][1000 genomes]
rs61373424	0.83[ASN][1000 genomes]
rs61466134	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66670902	0.80[ASN][1000 genomes]
rs68127612	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68187092	0.87[ASN][1000 genomes]
rs72736479	0.92[ASN][1000 genomes]
rs72736495	0.92[ASN][1000 genomes]
rs72736498	0.92[ASN][1000 genomes]
rs72738604	0.91[ASN][1000 genomes]
rs72738605	0.89[ASN][1000 genomes]
rs72738607	0.91[ASN][1000 genomes]
rs72738608	0.90[ASN][1000 genomes]
rs72738615	0.95[ASN][1000 genomes]
rs72738616	0.92[ASN][1000 genomes]
rs72738618	0.92[ASN][1000 genomes]
rs72738620	0.95[ASN][1000 genomes]
rs72738631	0.92[ASN][1000 genomes]
rs72738636	0.90[ASN][1000 genomes]
rs72738638	0.94[ASN][1000 genomes]
rs72738646	0.92[ASN][1000 genomes]
rs72738648	0.94[ASN][1000 genomes]
rs72738654	0.94[ASN][1000 genomes]
rs72738656	0.94[ASN][1000 genomes]
rs72738658	0.94[ASN][1000 genomes]
rs72738659	0.94[ASN][1000 genomes]
rs72738660	0.94[ASN][1000 genomes]
rs72738662	0.94[ASN][1000 genomes]
rs72738664	0.94[ASN][1000 genomes]
rs72738666	0.94[ASN][1000 genomes]
rs72738667	0.94[ASN][1000 genomes]
rs72738668	0.94[ASN][1000 genomes]
rs72738674	0.89[ASN][1000 genomes]
rs72738675	0.89[ASN][1000 genomes]
rs72738676	0.89[ASN][1000 genomes]
rs72738679	0.89[ASN][1000 genomes]
rs72738680	0.89[ASN][1000 genomes]
rs72738682	0.89[ASN][1000 genomes]
rs72738683	0.89[ASN][1000 genomes]
rs72738684	0.89[ASN][1000 genomes]
rs72738685	0.89[ASN][1000 genomes]
rs72738686	0.89[ASN][1000 genomes]
rs72738694	0.89[ASN][1000 genomes]
rs72738696	0.89[ASN][1000 genomes]
rs72738697	0.89[ASN][1000 genomes]
rs72738701	0.87[ASN][1000 genomes]
rs72740503	0.87[ASN][1000 genomes]
rs72740505	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72740506	0.89[ASN][1000 genomes]
rs72740508	0.90[ASN][1000 genomes]
rs72740509	0.90[ASN][1000 genomes]
rs72740514	0.84[ASN][1000 genomes]
rs748970	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs764014	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs8027386	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8030605	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56388800-56437200	Weak transcription	Pancreas	Pancrea
2	chr15:56388800-56441600	Weak transcription	Lung	lung
3	chr15:56411600-56436800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:56413400-56441600	Weak transcription	Spleen	Spleen
5	chr15:56416200-56434800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:56416200-56437800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:56416200-56441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:56416400-56434600	Weak transcription	NH-A	brain
9	chr15:56419200-56434200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr15:56419200-56438400	Weak transcription	Psoas Muscle	Psoas
11	chr15:56419600-56434400	Weak transcription	NHDF-Ad	bronchial
12	chr15:56419600-56439000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:56420400-56434800	Weak transcription	HSMMtube	muscle
14	chr15:56421600-56437800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:56422200-56434800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:56422200-56440400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:56423800-56434600	Weak transcription	Left Ventricle	heart
18	chr15:56424800-56453800	Weak transcription	Brain Substantia Nigra	brain
19	chr15:56427000-56439600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:56427200-56434800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:56429200-56437200	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:56429400-56442600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:56429600-56437800	Weak transcription	Small Intestine	intestine
24	chr15:56429600-56441200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:56431600-56434800	Weak transcription	NHLF	lung
26	chr15:56431600-56442800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr15:56431800-56436000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:56431800-56437800	Weak transcription	Ovary	ovary
29	chr15:56432000-56434800	Weak transcription	Brain Anterior Caudate	brain
30	chr15:56432000-56438000	Weak transcription	Right Ventricle	heart
31	chr15:56432400-56436600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:56432400-56437800	Weak transcription	Fetal Heart	heart
33	chr15:56432600-56435200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:56432600-56435400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:56432600-56435400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:56432600-56435400	Strong transcription	Duodenum Mucosa	Duodenum
37	chr15:56432600-56435800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:56432600-56436200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:56432600-56436400	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:56432800-56434600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:56432800-56435200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr15:56432800-56435200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr15:56432800-56435200	Strong transcription	Fetal Lung	lung
44	chr15:56432800-56435400	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr15:56432800-56435400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:56432800-56435400	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:56432800-56435400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr15:56432800-56435400	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr15:56432800-56435400	Strong transcription	Osteobl	bone
50	chr15:56432800-56435600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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