Variant report

Variant	rs4351994
Chromosome Location	chr15:56432339-56432340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs1031077	0.83[ASN][1000 genomes]
rs10518839	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10518842	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10518843	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10851601	0.80[ASN][1000 genomes]
rs10851603	0.87[ASN][1000 genomes]
rs10851604	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11071252	0.85[ASN][1000 genomes]
rs11071253	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11071255	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11629674	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11629809	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11630394	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11631518	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11631910	0.82[ASN][1000 genomes]
rs11631915	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11632023	0.84[ASN][1000 genomes]
rs11632081	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11632087	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11632394	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11632619	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11634404	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11634455	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11634689	0.80[ASN][1000 genomes]
rs11636035	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11636040	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11637507	0.80[ASN][1000 genomes]
rs11637515	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11637789	0.81[ASN][1000 genomes]
rs11637998	0.82[ASN][1000 genomes]
rs11638709	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12437864	0.82[ASN][1000 genomes]
rs12439682	0.84[ASN][1000 genomes]
rs12442539	0.84[ASN][1000 genomes]
rs12443118	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12591093	0.82[ASN][1000 genomes]
rs12591236	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12591270	0.80[ASN][1000 genomes]
rs12591980	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12592096	0.82[ASN][1000 genomes]
rs12592130	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12592449	0.83[ASN][1000 genomes]
rs12592881	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12592899	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12593096	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12593439	0.82[AMR][1000 genomes]
rs12593569	0.84[ASN][1000 genomes]
rs12593713	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12593752	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12594038	0.82[AMR][1000 genomes]
rs12594103	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12594121	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12594245	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12594860	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12594908	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12595072	0.85[ASN][1000 genomes]
rs12595323	0.82[ASN][1000 genomes]
rs12595366	0.84[ASN][1000 genomes]
rs12595428	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12595490	0.82[AMR][1000 genomes]
rs12595496	0.82[AMR][1000 genomes]
rs12595557	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12595649	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12595840	0.82[ASN][1000 genomes]
rs1550586	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16976788	0.84[ASN][1000 genomes]
rs16976792	0.86[ASN][1000 genomes]
rs16976801	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16976810	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16976821	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16976831	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16976832	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17841131	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1867089	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1879344	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1879345	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1879347	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1879348	0.82[ASN][1000 genomes]
rs1879349	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2414465	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2414467	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2414468	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2414471	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2414472	0.82[AMR][1000 genomes]
rs2899596	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2899597	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34401800	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35607436	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55942364	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55957636	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56083605	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56156930	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56215018	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56398703	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs58084889	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs58265497	0.83[ASN][1000 genomes]
rs58934221	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59025920	0.85[ASN][1000 genomes]
rs60210425	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60417530	0.82[ASN][1000 genomes]
rs61270078	0.83[ASN][1000 genomes]
rs72736479	0.81[ASN][1000 genomes]
rs72736495	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72736498	0.85[ASN][1000 genomes]
rs72738604	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72738605	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738607	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72738608	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72738615	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72738616	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72738618	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72738620	0.87[ASN][1000 genomes]
rs72738631	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72738636	0.80[ASN][1000 genomes]
rs72738638	0.86[ASN][1000 genomes]
rs72738646	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72738648	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738654	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738656	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738658	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738659	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738660	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738662	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738664	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738666	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738667	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738668	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72738674	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738675	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738676	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738679	0.82[ASN][1000 genomes]
rs72738680	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738682	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738683	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738684	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738685	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738686	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738694	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738696	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738697	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72738701	0.82[AMR][1000 genomes]
rs72740503	0.82[AMR][1000 genomes]
rs72740506	0.82[AMR][1000 genomes]
rs72740508	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72740509	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs764014	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8030605	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56388800-56433000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:56388800-56437200	Weak transcription	Pancreas	Pancrea
3	chr15:56388800-56441600	Weak transcription	Lung	lung
4	chr15:56411600-56436800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:56413400-56441600	Weak transcription	Spleen	Spleen
6	chr15:56416000-56433200	Weak transcription	Hela-S3	cervix
7	chr15:56416200-56433000	Weak transcription	Thymus	Thymus
8	chr15:56416200-56434800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:56416200-56437800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:56416200-56441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:56416400-56434600	Weak transcription	NH-A	brain
12	chr15:56419200-56433000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:56419200-56433000	Weak transcription	Fetal Thymus	thymus
14	chr15:56419200-56433000	Weak transcription	HSMM	muscle
15	chr15:56419200-56434200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:56419200-56438400	Weak transcription	Psoas Muscle	Psoas
17	chr15:56419400-56432800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:56419400-56432800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:56419400-56432800	Weak transcription	Osteobl	bone
20	chr15:56419400-56433000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr15:56419400-56433000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr15:56419400-56433200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:56419400-56434000	Weak transcription	HMEC	breast
24	chr15:56419600-56433000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr15:56419600-56434400	Weak transcription	NHDF-Ad	bronchial
26	chr15:56419600-56439000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:56420400-56434000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:56420400-56434800	Weak transcription	HSMMtube	muscle
29	chr15:56420800-56433000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:56421000-56432600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr15:56421000-56433000	Weak transcription	Liver	Liver
32	chr15:56421000-56433000	Weak transcription	NHEK	skin
33	chr15:56421000-56433400	Weak transcription	Brain Angular Gyrus	brain
34	chr15:56421200-56432800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:56421600-56437800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:56422000-56433200	Weak transcription	Fetal Kidney	kidney
37	chr15:56422200-56432600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:56422200-56432600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:56422200-56432800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr15:56422200-56432800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr15:56422200-56432800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr15:56422200-56433000	Weak transcription	Adipose Nuclei	Adipose
43	chr15:56422200-56433000	Weak transcription	Fetal Intestine Large	intestine
44	chr15:56422200-56433200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr15:56422200-56433200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:56422200-56434800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:56422200-56440400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:56422400-56432800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr15:56422400-56433000	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:56422400-56433000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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