Variant report

Variant	rs68127612
Chromosome Location	chr15:56377112-56377113
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1031077	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10518839	0.83[ASN][1000 genomes]
rs10518842	0.83[ASN][1000 genomes]
rs10518843	0.83[ASN][1000 genomes]
rs10851601	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10851603	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11071245	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11071246	0.91[ASN][1000 genomes]
rs11071250	0.83[ASN][1000 genomes]
rs11071252	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11071253	0.80[ASN][1000 genomes]
rs11071254	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11629674	0.81[ASN][1000 genomes]
rs11631518	0.85[ASN][1000 genomes]
rs11632023	0.81[ASN][1000 genomes]
rs11632087	0.80[ASN][1000 genomes]
rs11634404	0.87[ASN][1000 genomes]
rs11634455	0.83[ASN][1000 genomes]
rs11636040	0.85[ASN][1000 genomes]
rs11637507	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11637789	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11638709	0.83[ASN][1000 genomes]
rs12437864	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12439682	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12439907	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12440142	0.82[AFR][1000 genomes]
rs12442539	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12443118	0.90[ASN][1000 genomes]
rs12443429	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12591236	0.82[ASN][1000 genomes]
rs12591270	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12591294	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12591980	0.83[ASN][1000 genomes]
rs12592096	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12592130	0.81[ASN][1000 genomes]
rs12592449	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12592690	0.83[ASN][1000 genomes]
rs12593569	0.81[ASN][1000 genomes]
rs12593752	0.83[ASN][1000 genomes]
rs12594103	0.81[ASN][1000 genomes]
rs12594245	0.83[ASN][1000 genomes]
rs12594860	0.83[ASN][1000 genomes]
rs12594908	0.82[ASN][1000 genomes]
rs12595072	0.87[ASN][1000 genomes]
rs12595366	0.81[ASN][1000 genomes]
rs12595649	0.83[ASN][1000 genomes]
rs12595840	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1550586	0.85[ASN][1000 genomes]
rs16976734	0.82[AFR][1000 genomes]
rs16976760	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16976788	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16976792	0.83[ASN][1000 genomes]
rs16976801	0.83[ASN][1000 genomes]
rs16976810	0.83[ASN][1000 genomes]
rs16976821	0.83[ASN][1000 genomes]
rs16976826	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17841131	0.83[ASN][1000 genomes]
rs1867089	0.81[ASN][1000 genomes]
rs1879344	0.83[ASN][1000 genomes]
rs1879345	0.83[ASN][1000 genomes]
rs1879347	0.83[ASN][1000 genomes]
rs1879348	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1879349	0.80[ASN][1000 genomes]
rs2414471	0.80[ASN][1000 genomes]
rs2899596	0.83[ASN][1000 genomes]
rs2899597	0.83[ASN][1000 genomes]
rs34383693	0.86[ASN][1000 genomes]
rs34401800	0.81[ASN][1000 genomes]
rs35371323	0.90[ASN][1000 genomes]
rs3803459	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4142481	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4363812	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55946012	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs56156930	0.83[ASN][1000 genomes]
rs58036957	0.93[ASN][1000 genomes]
rs58265497	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59025920	0.87[ASN][1000 genomes]
rs59230019	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60210425	0.83[ASN][1000 genomes]
rs60417530	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61072507	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61270078	0.80[ASN][1000 genomes]
rs61373424	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs61466134	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61500930	0.85[AFR][1000 genomes]
rs66670902	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs68187092	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs72736464	0.90[ASN][1000 genomes]
rs72736479	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72736495	0.87[ASN][1000 genomes]
rs72736498	0.87[ASN][1000 genomes]
rs72738604	0.83[ASN][1000 genomes]
rs72738605	0.80[ASN][1000 genomes]
rs72738607	0.83[ASN][1000 genomes]
rs72738608	0.82[ASN][1000 genomes]
rs72738615	0.85[ASN][1000 genomes]
rs72738616	0.81[ASN][1000 genomes]
rs72738618	0.81[ASN][1000 genomes]
rs72738620	0.85[ASN][1000 genomes]
rs72738631	0.81[ASN][1000 genomes]
rs72738636	0.80[ASN][1000 genomes]
rs72738638	0.83[ASN][1000 genomes]
rs72738646	0.82[ASN][1000 genomes]
rs72738648	0.83[ASN][1000 genomes]
rs72738654	0.83[ASN][1000 genomes]
rs72738656	0.83[ASN][1000 genomes]
rs72738658	0.83[ASN][1000 genomes]
rs72738659	0.83[ASN][1000 genomes]
rs72738660	0.83[ASN][1000 genomes]
rs72738662	0.83[ASN][1000 genomes]
rs72738664	0.83[ASN][1000 genomes]
rs72738666	0.83[ASN][1000 genomes]
rs72738667	0.83[ASN][1000 genomes]
rs72738668	0.83[ASN][1000 genomes]
rs72740505	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72740508	0.80[ASN][1000 genomes]
rs72740509	0.80[ASN][1000 genomes]
rs748970	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs764014	0.81[ASN][1000 genomes]
rs8027386	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8030605	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56363600-56383800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr15:56369800-56385600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:56374800-56381600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:56375000-56381600	Weak transcription	HMEC	breast
5	chr15:56375000-56385000	Weak transcription	NHEK	skin
6	chr15:56375000-56385800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:56375000-56386000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:56375200-56379600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:56375200-56382800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:56375200-56384600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:56375400-56385400	Weak transcription	Placenta	Placenta
12	chr15:56375600-56386200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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