Variant report

Variant	rs17243259
Chromosome Location	chr11:26353951-26353952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26353156..26354057-chr9:139137195..139137941,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000165661	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10501045	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11029511	0.82[ASN][1000 genomes]
rs35374718	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7121193	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26352600-26354400	Active TSS	Brain Anterior Caudate	brain
2	chr11:26353000-26355600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:26353200-26354000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:26353200-26354000	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr11:26353200-26354400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr11:26353200-26354400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr11:26353200-26354400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr11:26353200-26354400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
9	chr11:26353200-26354400	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr11:26353400-26354000	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr11:26353400-26354000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:26353400-26354000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:26353400-26354000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr11:26353400-26354000	Active TSS	Brain Germinal Matrix	brain
15	chr11:26353400-26354000	Active TSS	Colon Smooth Muscle	Colon
16	chr11:26353400-26354000	Enhancers	Fetal Heart	heart
17	chr11:26353400-26354000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
18	chr11:26353400-26354000	Flanking Active TSS	Fetal Muscle Leg	muscle
19	chr11:26353400-26354000	Flanking Active TSS	Pancreas	Pancrea
20	chr11:26353400-26354000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
21	chr11:26353400-26354000	Active TSS	Rectal Smooth Muscle	rectum
22	chr11:26353400-26354000	ZNF genes & repeats	Spleen	Spleen
23	chr11:26353400-26354000	Bivalent/Poised TSS	A549	lung
24	chr11:26353400-26354000	Active TSS	NHDF-Ad	bronchial
25	chr11:26353400-26354000	Bivalent/Poised TSS	NHLF	lung
26	chr11:26353400-26354000	Flanking Bivalent TSS/Enh	Osteobl	bone
27	chr11:26353400-26354200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
28	chr11:26353400-26354200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:26353400-26354400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
30	chr11:26353400-26354400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:26353400-26354400	Active TSS	Fetal Brain Female	brain
32	chr11:26353400-26354600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:26353600-26354000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr11:26353600-26354000	Active TSS	H1 Cell Line	embryonic stem cell
35	chr11:26353600-26354000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:26353600-26354000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:26353600-26354000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:26353600-26354000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:26353600-26354000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
40	chr11:26353600-26354000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:26353600-26354000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:26353600-26354000	Bivalent Enhancer	Liver	Liver
43	chr11:26353600-26354000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
44	chr11:26353600-26354000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
45	chr11:26353600-26354000	Bivalent/Poised TSS	Fetal Thymus	thymus
46	chr11:26353600-26354000	Enhancers	Ovary	ovary
47	chr11:26353600-26354000	Active TSS	Psoas Muscle	Psoas
48	chr11:26353600-26354000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
49	chr11:26353600-26354000	Bivalent/Poised TSS	Hela-S3	cervix
50	chr11:26353600-26354000	Bivalent/Poised TSS	HSMMtube	muscle

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