Variant report

Variant	rs7121193
Chromosome Location	chr11:26350731-26350732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10501045	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029511	0.94[ASN][1000 genomes]
rs17243259	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35374718	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7121193	TXNDC3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26341800-26353200	Weak transcription	Pancreas	Pancrea
2	chr11:26349600-26350800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:26349800-26351800	Enhancers	Fetal Brain Male	brain
4	chr11:26349800-26353200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:26350000-26351200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:26350000-26352000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:26350000-26353200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:26350000-26353200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:26350200-26352000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:26350400-26352000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:26350600-26351800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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