Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10516875	1.00[MEX][hapmap]
rs11735195	1.00[LWK][hapmap]
rs12507217	0.85[CEU][hapmap]
rs12509471	0.80[CEU][hapmap]
rs1454329	0.94[CEU][hapmap];0.84[CHB][hapmap];0.81[GIH][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap]
rs17017522	0.80[CEU][hapmap]
rs17183653	0.89[CEU][hapmap]
rs17183896	0.89[CEU][hapmap]
rs17185435	0.94[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs17185519	0.94[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs17187179	0.84[CEU][hapmap]
rs17188168	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs17188252	0.83[CEU][hapmap];0.82[CHB][hapmap];0.90[MEX][hapmap]
rs17243064	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17243751	0.89[CEU][hapmap]
rs17244283	0.94[CEU][hapmap];0.81[GIH][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs17245345	0.94[CEU][hapmap];0.83[CHB][hapmap];0.86[EUR][1000 genomes]
rs17246676	0.85[CEU][hapmap]
rs17248796	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs60127568	0.86[EUR][1000 genomes]
rs6822939	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs6833239	0.80[CEU][hapmap]
rs6833272	0.85[CEU][hapmap];1.00[LWK][hapmap]
rs723782	0.85[CEU][hapmap]
rs749653	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs7663098	0.89[CEU][hapmap]
rs7683055	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91668600-91673600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:91671400-91671800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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