Variant report

Variant	rs17244283
Chromosome Location	chr4:91672350-91672351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12507217	1.00[ASW][hapmap];0.90[CEU][hapmap];0.80[MEX][hapmap]
rs12509471	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs12513283	1.00[YRI][hapmap]
rs1454329	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs1514743	0.80[CEU][hapmap]
rs17017522	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs17183653	0.95[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs17183896	0.95[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs17185435	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17185519	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17187179	0.90[CEU][hapmap];0.83[CHB][hapmap]
rs17243064	0.89[CEU][hapmap]
rs17243751	0.94[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17244178	0.94[CEU][hapmap];0.81[GIH][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs17245345	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17246676	0.90[CEU][hapmap];0.82[CHB][hapmap]
rs17248796	0.83[CEU][hapmap]
rs2904365	0.81[CEU][hapmap]
rs60127568	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6819756	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6833239	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs6833272	1.00[ASW][hapmap];0.90[CEU][hapmap];0.83[CHB][hapmap];0.86[MEX][hapmap]
rs723782	0.90[CEU][hapmap]
rs749653	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7663098	0.95[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7683055	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7689600	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91668600-91673600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:91671800-91673600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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