Variant report

Variant	rs17244806
Chromosome Location	chr5:74640826-74640827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:74640727-74641942	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:74638485..74641131-chr5:74648840..74652146,3	K562	blood:
2	chr5:74630501..74635424-chr5:74638636..74642776,5	K562	blood:
3	chr5:74638395..74641765-chr5:74658081..74661333,3	K562	blood:

Variant related genes	Relation type
HMGCR	TF binding region
ENSG00000271815	Chromatin interaction
ENSG00000113161	Chromatin interaction
ENSG00000247372	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12656938	0.85[EUR][1000 genomes]
rs12659331	0.85[EUR][1000 genomes]
rs2241402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2303151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3761739	0.82[ASN][1000 genomes]
rs4432861	0.80[EUR][1000 genomes]
rs4703669	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4704209	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4704215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4704218	0.85[EUR][1000 genomes]
rs55727654	0.82[ASN][1000 genomes]
rs57904342	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60872847	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7717396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7726771	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74633800-74645800	Weak transcription	Gastric	stomach
2	chr5:74633800-74645800	Weak transcription	Spleen	Spleen
3	chr5:74633800-74650400	Weak transcription	Pancreas	Pancrea
4	chr5:74634200-74641200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:74634200-74641400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr5:74634400-74645400	Weak transcription	Psoas Muscle	Psoas
7	chr5:74634400-74645600	Weak transcription	Esophagus	oesophagus
8	chr5:74634400-74650800	Weak transcription	Aorta	Aorta
9	chr5:74634400-74652400	Weak transcription	Right Ventricle	heart
10	chr5:74634600-74642200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:74634600-74644200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:74634800-74641200	Weak transcription	Brain Hippocampus Middle	brain
13	chr5:74634800-74641400	Weak transcription	Primary T cells from cord blood	blood
14	chr5:74634800-74641400	Weak transcription	Adipose Nuclei	Adipose
15	chr5:74634800-74641800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr5:74635000-74641200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr5:74635000-74641200	Weak transcription	Brain Anterior Caudate	brain
18	chr5:74635000-74641200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr5:74635000-74641400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr5:74635000-74641400	Weak transcription	Brain Substantia Nigra	brain
21	chr5:74635000-74641400	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:74635000-74641600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr5:74635000-74641800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr5:74635000-74643000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr5:74635000-74644200	Weak transcription	Brain Angular Gyrus	brain
26	chr5:74635000-74645200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr5:74635000-74652600	Weak transcription	Fetal Heart	heart
28	chr5:74635200-74641600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr5:74635600-74659600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr5:74635800-74641600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:74635800-74641600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr5:74635800-74641800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr5:74635800-74641800	Weak transcription	Fetal Lung	lung
34	chr5:74635800-74644400	Weak transcription	Ovary	ovary
35	chr5:74635800-74645400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:74635800-74646000	Weak transcription	Small Intestine	intestine
37	chr5:74636400-74643400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr5:74636400-74645400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr5:74636600-74641400	Weak transcription	Fetal Brain Male	brain
40	chr5:74636600-74641600	Weak transcription	Brain Germinal Matrix	brain
41	chr5:74636800-74641800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr5:74636800-74645800	Weak transcription	Stomach Mucosa	stomach
43	chr5:74636800-74649200	Strong transcription	K562	blood
44	chr5:74636800-74659200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr5:74637200-74655800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr5:74637200-74659600	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr5:74637400-74641400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr5:74637600-74641600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr5:74637800-74658400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr5:74637800-74658800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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