Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12654238	0.86[AFR][1000 genomes]
rs12659206	0.86[AFR][1000 genomes]
rs12659221	0.86[AFR][1000 genomes]
rs1423526	0.86[AFR][1000 genomes]
rs17244806	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17671549	0.86[AFR][1000 genomes]
rs17739025	0.86[AFR][1000 genomes]
rs2241402	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2303151	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4703666	0.86[AFR][1000 genomes]
rs4703669	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4704203	0.86[AFR][1000 genomes]
rs4704205	0.86[AFR][1000 genomes]
rs4704209	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4704215	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57528678	0.86[AFR][1000 genomes]
rs60872847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870787	0.86[AFR][1000 genomes]
rs6872197	0.86[AFR][1000 genomes]
rs7700655	0.86[AFR][1000 genomes]
rs7717396	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7726771	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7731499	0.86[AFR][1000 genomes]
rs7731875	0.86[AFR][1000 genomes]
rs7737008	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74607800-74615800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:74612800-74614800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr5:74614000-74621400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:74614200-74614800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr5:74614200-74615600	Enhancers	Primary B cells from cord blood	blood

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