Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13088111	0.86[JPT][hapmap]
rs182418	0.83[CEU][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs211999	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs212003	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs212004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs212058	0.82[TSI][hapmap]
rs212059	0.83[CEU][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs212065	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs212066	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs2630187	0.88[CHB][hapmap];0.90[CHD][hapmap];0.91[MEX][hapmap];0.88[ASN][1000 genomes]
rs2630207	0.88[CHB][hapmap];0.83[CHD][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs2736760	0.83[AMR][1000 genomes]
rs2736764	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs2736765	0.88[CHB][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2736766	0.83[CHB][hapmap];0.87[ASN][1000 genomes]
rs2736767	0.82[CHB][hapmap];0.86[CHD][hapmap];0.91[MEX][hapmap];0.88[ASN][1000 genomes]
rs2736769	0.83[CHB][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2736819	0.83[AMR][1000 genomes]
rs3845976	0.88[CHB][hapmap];0.83[CHD][hapmap];0.91[MEX][hapmap];0.88[ASN][1000 genomes]
rs6807325	0.88[CHB][hapmap];0.86[CHD][hapmap];0.91[MEX][hapmap];0.88[ASN][1000 genomes]
rs73092171	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7433134	0.82[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60041000-60049000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:60042000-60051600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:60042800-60050200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:60043000-60051400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:60044000-60048200	Genic enhancers	Dnd41	blood
6	chr3:60044800-60050200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:60045000-60054200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr3:60045600-60050200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:60045800-60052400	Enhancers	Primary T cells from cord blood	blood
10	chr3:60046400-60048200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr3:60046800-60051800	Enhancers	Thymus	Thymus
12	chr3:60047200-60048200	Weak transcription	Fetal Thymus	thymus
13	chr3:60047200-60048800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:60047400-60048000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr3:60047400-60048800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr3:60047400-60052200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:60047600-60048600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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