Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs172454	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs182418	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs212003	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs212004	0.85[EUR][1000 genomes]
rs212043	0.83[CEU][hapmap]
rs212049	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs212050	0.83[CHB][hapmap]
rs212051	0.83[CHB][hapmap]
rs212054	0.84[ASN][1000 genomes]
rs212058	0.88[CEU][hapmap]
rs212059	1.00[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs212064	0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs212066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2630187	0.82[CHB][hapmap]
rs2630207	0.82[CHB][hapmap]
rs2736764	0.82[CHB][hapmap]
rs2736765	0.83[CHB][hapmap]
rs3845976	0.82[CHB][hapmap]
rs6807325	0.82[CHB][hapmap]
rs73092171	0.85[EUR][1000 genomes]
rs7433134	0.89[CHB][hapmap]
rs7433793	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60013400-60022600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:60017200-60022800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:60020200-60030000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:60021000-60024800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:60021000-60031600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:60021200-60022200	Enhancers	Thymus	Thymus
7	chr3:60021600-60021800	Enhancers	Fetal Thymus	thymus
8	chr3:60021600-60022000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:60021600-60022400	Enhancers	Dnd41	blood

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