Variant report

Variant	rs7433793
Chromosome Location	chr3:60019550-60019551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs182418	0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs212049	0.84[CHD][hapmap]
rs212054	0.93[ASN][1000 genomes]
rs212058	0.85[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs212059	1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs212061	0.85[CHB][hapmap]
rs212064	0.91[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs212065	0.81[ASN][1000 genomes]
rs212066	0.82[ASN][1000 genomes]
rs2630187	0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs2630207	0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs2736761	0.81[EUR][1000 genomes]
rs2736762	0.81[EUR][1000 genomes]
rs2736764	0.80[EUR][1000 genomes]
rs2736765	0.80[EUR][1000 genomes]
rs2736767	0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs3845976	0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs6807325	0.89[TSI][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60003800-60021200	Weak transcription	Thymus	Thymus
2	chr3:60013400-60022600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr3:60016000-60021600	Weak transcription	Dnd41	blood
4	chr3:60017000-60019600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:60017200-60022800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:60017400-60019800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:60017400-60019800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr3:60018000-60019800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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