Variant report

Variant	rs2736762
Chromosome Location	chr3:60061268-60061269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs212003	0.84[ASN][1000 genomes]
rs212004	0.84[ASN][1000 genomes]
rs212064	0.85[EUR][1000 genomes]
rs2630187	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2630207	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2736760	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2736761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2736764	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2736765	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2736766	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2736767	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2736769	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2736819	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3845976	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6807325	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73092171	0.82[ASN][1000 genomes]
rs7433793	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv520108	chr3:60059041-60062939	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv523496	chr3:60059041-60064296	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60051600-60062000	Weak transcription	Aorta	Aorta
2	chr3:60051800-60063000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:60058400-60061800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr3:60059400-60061600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr3:60059400-60061800	Enhancers	Fetal Thymus	thymus
6	chr3:60059400-60062200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr3:60059600-60061400	Enhancers	Primary T cells from cord blood	blood
8	chr3:60059800-60061800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:60059800-60064800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:60060200-60062000	Enhancers	Thymus	Thymus
11	chr3:60060400-60061400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:60060600-60061400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr3:60060800-60061600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:60061000-60061800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:60061000-60064000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr3:60061200-60061600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:60061200-60061800	Enhancers	Primary hematopoietic stem cells	blood
18	chr3:60061200-60061800	Transcr. at gene 5' and 3'	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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