Variant report

Variant	rs17249466
Chromosome Location	chr11:32618813-32618814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:32618439-32620448	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:32614271..32616312-chr11:32618406..32621440,3	MCF-7	breast:
2	chr11:32453512..32456485-chr11:32618384..32621260,2	K562	blood:
3	chr11:32603991..32608863-chr11:32615596..32618826,4	MCF-7	breast:
4	chr11:32604808..32607064-chr11:32618117..32620137,2	MCF-7	breast:

Variant related genes	Relation type
HNRNPA3P9	TF binding region
ENSG00000149100	Chromatin interaction
ENSG00000270903	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11031888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031939	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11031949	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12365215	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4755378	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17249466	PRRG4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32607800-32621200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:32607800-32628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:32608200-32619400	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:32608400-32619000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:32608400-32619400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:32608400-32619400	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:32608400-32628200	Strong transcription	HSMM	muscle
8	chr11:32608600-32619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:32608600-32628400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:32608800-32628000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:32609000-32628200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:32609000-32629600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:32609200-32623400	Strong transcription	Hela-S3	cervix
14	chr11:32609200-32623800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:32609400-32630200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:32609800-32619800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:32609800-32626000	Strong transcription	NHDF-Ad	bronchial
18	chr11:32609800-32628000	Strong transcription	Fetal Thymus	thymus
19	chr11:32610000-32619200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:32610000-32619800	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:32610000-32619800	Strong transcription	Left Ventricle	heart
22	chr11:32610000-32620200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:32610000-32621200	Strong transcription	Liver	Liver
24	chr11:32610000-32621200	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr11:32610000-32626000	Strong transcription	Placenta	Placenta
26	chr11:32610000-32626000	Strong transcription	Osteobl	bone
27	chr11:32610000-32627400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr11:32610000-32627800	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr11:32610000-32628200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:32610200-32619000	Strong transcription	Fetal Brain Female	brain
31	chr11:32610200-32619800	Strong transcription	Fetal Lung	lung
32	chr11:32610200-32619800	Strong transcription	Fetal Muscle Trunk	muscle
33	chr11:32610200-32619800	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:32610200-32621200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:32610200-32621200	Strong transcription	Fetal Intestine Large	intestine
36	chr11:32610200-32624200	Strong transcription	HUVEC	blood vessel
37	chr11:32610200-32626200	Strong transcription	Primary B cells from peripheral blood	blood
38	chr11:32610200-32627400	Strong transcription	Adipose Nuclei	Adipose
39	chr11:32610200-32628200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr11:32610200-32628200	Strong transcription	NH-A	brain
41	chr11:32610400-32619600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
42	chr11:32610400-32619600	Strong transcription	Stomach Smooth Muscle	stomach
43	chr11:32610400-32619800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:32610400-32620200	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr11:32610400-32627400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:32610600-32619400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:32610600-32619800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr11:32610600-32620200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:32610600-32621000	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr11:32610600-32628000	Strong transcription	GM12878-XiMat	blood

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