Variant report

Variant	rs11031939
Chromosome Location	chr11:32720025-32720026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10835955	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11031888	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11031889	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11031900	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11031928	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11031949	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11031951	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs11031952	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11031975	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11031978	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11031981	0.81[AMR][1000 genomes]
rs11031994	0.87[AFR][1000 genomes]
rs11031999	0.87[AFR][1000 genomes]
rs11032017	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs12365215	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12365339	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1396994	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17249466	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs174747	1.00[JPT][hapmap]
rs197703	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs197706	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2419772	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs2419773	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs2664693	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs2746037	1.00[JPT][hapmap]
rs2786800	1.00[JPT][hapmap]
rs2900979	1.00[CEU][hapmap]
rs4755378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652963	1.00[JPT][hapmap]
rs761284	1.00[JPT][hapmap]
rs761285	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs7950261	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs9943506	0.83[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1043616	chr11:32702734-32734607	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11031939	PRRG4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32711000-32725600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:32719800-32720600	Flanking Active TSS	A549	lung
3	chr11:32720000-32720400	Enhancers	HepG2	liver

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