Variant report

Variant	rs12365339
Chromosome Location	chr11:32658882-32658883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10835955	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11031888	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11031889	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11031900	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11031928	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11031939	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031949	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11031951	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs11031952	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11031975	1.00[AFR][1000 genomes]
rs11031978	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes]
rs11031994	0.87[AFR][1000 genomes]
rs11031999	0.87[AFR][1000 genomes]
rs12365215	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1396994	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17249466	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs174747	1.00[JPT][hapmap]
rs197703	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs197706	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap]
rs2664693	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs2900979	1.00[CEU][hapmap]
rs4755378	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950261	0.95[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424973	chr11:32633425-32664062	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12365339	QSER1	cis	cerebellum	SCAN
rs12365339	C11orf46	cis	parietal	SCAN
rs12365339	PRRG4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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