Variant report

Variant	rs11031928
Chromosome Location	chr11:32689201-32689202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10835955	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11031888	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11031889	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11031900	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11031939	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031949	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11031951	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs11031952	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11031975	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11031978	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11031981	0.81[AMR][1000 genomes]
rs11031994	0.87[AFR][1000 genomes]
rs11031999	0.87[AFR][1000 genomes]
rs11032017	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs12365215	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12365339	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1396994	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17249466	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs174747	1.00[JPT][hapmap]
rs197703	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs197706	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2419772	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs2419773	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs2664693	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs2900979	1.00[CEU][hapmap]
rs4755378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761284	1.00[JPT][hapmap]
rs761285	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs7950261	0.95[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11031928	PRRG4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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