Variant report

Variant	rs11031951
Chromosome Location	chr11:32746276-32746277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10835955	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs11031888	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11031889	1.00[ASW][hapmap];0.89[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11031900	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs11031928	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs11031939	0.89[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11031949	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031952	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs11031975	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11031978	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11031981	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11031994	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11031999	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11032000	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11032017	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs11032060	1.00[JPT][hapmap]
rs12365215	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12365339	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs1396994	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs17249466	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs174747	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs197703	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs197706	0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap]
rs197711	1.00[ASN][1000 genomes]
rs2419772	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap]
rs2419773	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap]
rs2664693	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2746037	1.00[JPT][hapmap]
rs2786800	1.00[JPT][hapmap]
rs2900979	0.89[CEU][hapmap]
rs4755378	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6484603	1.00[ASN][1000 genomes]
rs652963	1.00[JPT][hapmap]
rs7101848	1.00[ASN][1000 genomes]
rs7104368	1.00[JPT][hapmap]
rs7114137	1.00[ASN][1000 genomes]
rs7128509	1.00[JPT][hapmap]
rs761284	1.00[JPT][hapmap]
rs761285	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7950261	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9943506	0.83[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	nsv983179	chr11:32745147-32782088	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11031951	PRRG4	Cis_1M	lymphoblastoid	RTeQTL
rs11031951	C11orf46	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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