Variant report

Variant	rs2746037
Chromosome Location	chr11:32917505-32917506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32916175..32919465-chr11:32932228..32934625,3	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10454479	1.00[JPT][hapmap]
rs10767973	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10767977	1.00[ASN][1000 genomes]
rs10835991	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835996	1.00[ASN][1000 genomes]
rs10835997	1.00[ASN][1000 genomes]
rs11031939	1.00[JPT][hapmap]
rs11031949	1.00[JPT][hapmap]
rs11031951	1.00[JPT][hapmap]
rs11031952	1.00[JPT][hapmap]
rs11031978	1.00[JPT][hapmap]
rs11032017	1.00[JPT][hapmap]
rs11032058	1.00[ASN][1000 genomes]
rs11032060	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11032072	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11032073	1.00[ASN][1000 genomes]
rs11032074	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032076	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12224002	1.00[ASN][1000 genomes]
rs1396994	1.00[JPT][hapmap]
rs174747	1.00[JPT][hapmap]
rs1961248	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1961543	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs197703	1.00[JPT][hapmap]
rs197706	1.00[JPT][hapmap]
rs2092657	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2249555	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2419772	1.00[JPT][hapmap]
rs2419773	1.00[JPT][hapmap]
rs2419783	1.00[ASN][1000 genomes]
rs2664693	1.00[JPT][hapmap]
rs2746036	0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs2786800	0.94[ASW][hapmap];0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2786802	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4755476	0.83[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4756355	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756373	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756385	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589450	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs602126	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484610	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652963	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104368	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108574	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109890	1.00[ASN][1000 genomes]
rs7118330	1.00[ASN][1000 genomes]
rs7128509	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73474587	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7395190	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481844	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7481878	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761284	1.00[JPT][hapmap]
rs761285	1.00[JPT][hapmap]
rs7941237	1.00[ASN][1000 genomes]
rs7944318	1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7950261	1.00[JPT][hapmap]
rs9919531	1.00[ASN][1000 genomes]
rs9943506	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2746037	QSER1	cis	cerebellum	SCAN

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32915800-32917600	Weak transcription	Gastric	stomach
2	chr11:32915800-32918800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:32915800-32923200	Weak transcription	Lung	lung
4	chr11:32915800-32923200	Weak transcription	Spleen	Spleen
5	chr11:32916000-32918800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:32916000-32921400	Weak transcription	Small Intestine	intestine
7	chr11:32916000-32923000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:32916000-32923200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:32916000-32923200	Weak transcription	Esophagus	oesophagus
10	chr11:32916000-32923400	Weak transcription	Left Ventricle	heart
11	chr11:32916000-32953200	Weak transcription	Pancreas	Pancrea
12	chr11:32916200-32917600	Enhancers	Brain Substantia Nigra	brain
13	chr11:32916200-32917800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:32916200-32917800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr11:32916200-32919200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:32916200-32919200	Weak transcription	Ovary	ovary
17	chr11:32916200-32920000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:32916200-32920800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:32916200-32921200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:32916200-32922400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:32916200-32923200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:32916200-32926800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:32916200-32932400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:32916200-32935200	Weak transcription	Aorta	Aorta
25	chr11:32916200-32953200	Weak transcription	Right Ventricle	heart
26	chr11:32916400-32917600	Enhancers	Fetal Heart	heart
27	chr11:32916400-32917600	Enhancers	Fetal Lung	lung
28	chr11:32916400-32917800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr11:32916400-32917800	Enhancers	Primary hematopoietic stem cells	blood
30	chr11:32916400-32917800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:32916400-32920400	Weak transcription	Fetal Thymus	thymus
32	chr11:32916400-32920400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:32916400-32920800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr11:32916400-32920800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:32916400-32920800	Weak transcription	Fetal Intestine Large	intestine
36	chr11:32916400-32922000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:32916400-32922600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:32916400-32923200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr11:32916400-32923400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr11:32916400-32925800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:32916400-32925800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:32916400-32926600	Weak transcription	Adipose Nuclei	Adipose
43	chr11:32916400-32926600	Weak transcription	Osteobl	bone
44	chr11:32916400-32940000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr11:32916400-32952800	Weak transcription	Fetal Intestine Small	intestine
46	chr11:32916400-32953200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr11:32916400-32953400	Weak transcription	NHLF	lung
48	chr11:32916400-32953600	Weak transcription	NHDF-Ad	bronchial
49	chr11:32916600-32917800	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
50	chr11:32916600-32917800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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