Variant report

Variant	rs11032058
Chromosome Location	chr11:32939853-32939854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32933148..32935266-chr11:32937418..32940169,3	K562	blood:
2	chr11:32913434..32915654-chr11:32937933..32940006,3	MCF-7	breast:
3	chr11:32931627..32937839-chr11:32937972..32943855,8	K562	blood:
4	chr11:32913396..32915268-chr11:32939750..32941847,3	K562	blood:
5	chr11:32913172..32915250-chr11:32939039..32941847,3	K562	blood:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10454479	1.00[AFR][1000 genomes]
rs10767973	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767977	1.00[ASN][1000 genomes]
rs10835991	1.00[ASN][1000 genomes]
rs10835996	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10835997	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032026	1.00[AFR][1000 genomes]
rs11032060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032071	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11032072	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032073	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032074	1.00[ASN][1000 genomes]
rs11032076	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224002	1.00[ASN][1000 genomes]
rs2092657	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143572	1.00[AFR][1000 genomes]
rs2249555	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2419772	1.00[AFR][1000 genomes]
rs2419783	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746037	1.00[ASN][1000 genomes]
rs2786800	1.00[ASN][1000 genomes]
rs35529733	1.00[AFR][1000 genomes]
rs4755476	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756355	1.00[ASN][1000 genomes]
rs4756373	1.00[ASN][1000 genomes]
rs4756385	1.00[ASN][1000 genomes]
rs589450	1.00[ASN][1000 genomes]
rs602126	1.00[ASN][1000 genomes]
rs6484610	1.00[ASN][1000 genomes]
rs652963	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104368	1.00[ASN][1000 genomes]
rs7108574	1.00[ASN][1000 genomes]
rs7109890	1.00[ASN][1000 genomes]
rs7113870	1.00[AFR][1000 genomes]
rs7118330	1.00[ASN][1000 genomes]
rs7124151	1.00[AFR][1000 genomes]
rs7128509	1.00[ASN][1000 genomes]
rs73474587	1.00[ASN][1000 genomes]
rs7395190	1.00[ASN][1000 genomes]
rs7481878	1.00[ASN][1000 genomes]
rs761285	1.00[AFR][1000 genomes]
rs7935374	1.00[AFR][1000 genomes]
rs7941237	1.00[ASN][1000 genomes]
rs7944318	1.00[ASN][1000 genomes]
rs7950261	1.00[AFR][1000 genomes]
rs9919531	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11032058	PRRG4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32916000-32953200	Weak transcription	Pancreas	Pancrea
2	chr11:32916200-32953200	Weak transcription	Right Ventricle	heart
3	chr11:32916400-32940000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:32916400-32952800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:32916400-32953200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:32916400-32953400	Weak transcription	NHLF	lung
7	chr11:32916400-32953600	Weak transcription	NHDF-Ad	bronchial
8	chr11:32916600-32940600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:32917000-32952800	Weak transcription	Primary B cells from cord blood	blood
10	chr11:32917400-32951000	Weak transcription	HSMM	muscle
11	chr11:32917400-32953000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:32917600-32952800	Weak transcription	Fetal Stomach	stomach
13	chr11:32918000-32953200	Weak transcription	Fetal Brain Female	brain
14	chr11:32918600-32953600	Weak transcription	Fetal Brain Male	brain
15	chr11:32919600-32953000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:32921200-32952800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:32921200-32953200	Weak transcription	Primary T cells from cord blood	blood
18	chr11:32921400-32951000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:32921600-32940800	Weak transcription	Small Intestine	intestine
20	chr11:32921800-32940200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:32921800-32941400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:32921800-32950800	Weak transcription	Fetal Thymus	thymus
23	chr11:32922600-32940800	Weak transcription	Fetal Intestine Large	intestine
24	chr11:32922600-32951200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:32922800-32952800	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:32924000-32952800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:32924000-32952800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:32924000-32953200	Weak transcription	Left Ventricle	heart
29	chr11:32924400-32949600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:32924400-32951200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr11:32926400-32952800	Weak transcription	Ovary	ovary
32	chr11:32926800-32951000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:32927200-32953200	Weak transcription	Fetal Heart	heart
34	chr11:32927400-32951200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:32927400-32953400	Weak transcription	Fetal Kidney	kidney
36	chr11:32928200-32952800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:32928400-32947200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:32930600-32951200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:32932400-32946200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:32932800-32940200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:32932800-32948600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr11:32933400-32953200	Weak transcription	K562	blood
43	chr11:32933600-32951000	Weak transcription	Dnd41	blood
44	chr11:32934200-32940800	Weak transcription	Hela-S3	cervix
45	chr11:32935400-32953400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:32936600-32952800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr11:32936600-32952800	Weak transcription	HepG2	liver
48	chr11:32936800-32953000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:32937400-32953400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:32938200-32953200	Weak transcription	Rectal Mucosa Donor 31	rectum

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