Variant report

Variant	rs7935374
Chromosome Location	chr11:32907728-32907729
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32904524..32910209-chr11:32910222..32915650,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10454479	1.00[AFR][1000 genomes]
rs10835996	1.00[AFR][1000 genomes]
rs10835997	1.00[AFR][1000 genomes]
rs11031999	0.83[EUR][1000 genomes]
rs11032000	0.83[EUR][1000 genomes]
rs11032017	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11032026	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11032043	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032058	1.00[AFR][1000 genomes]
rs11032060	1.00[AFR][1000 genomes]
rs11032071	1.00[AFR][1000 genomes]
rs11032072	1.00[AFR][1000 genomes]
rs11032073	1.00[AFR][1000 genomes]
rs11032076	1.00[AFR][1000 genomes]
rs197702	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs197703	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs197706	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs197708	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs197711	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2143572	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2419772	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2419773	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2664693	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2746036	1.00[AFR][1000 genomes]
rs2900979	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2900980	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34991296	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35529733	1.00[AFR][1000 genomes]
rs4755451	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4755455	0.85[EUR][1000 genomes]
rs4756328	0.85[EUR][1000 genomes]
rs7101848	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7109323	0.81[EUR][1000 genomes]
rs7113870	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7124151	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs761285	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7931061	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7950261	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9943506	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7935374	PRRG4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32905200-32908200	Enhancers	Liver	Liver
2	chr11:32905800-32913400	Weak transcription	Right Atrium	heart
3	chr11:32906800-32913400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:32907400-32913000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:32907600-32908000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links