Variant report

Variant	rs4755455
Chromosome Location	chr11:32903318-32903319
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10454479	1.00[JPT][hapmap]
rs10767973	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs11031939	1.00[JPT][hapmap]
rs11031949	1.00[JPT][hapmap]
rs11031951	0.92[GIH][hapmap];1.00[JPT][hapmap]
rs11031952	1.00[JPT][hapmap]
rs11031978	0.92[GIH][hapmap];1.00[JPT][hapmap]
rs11032017	0.84[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11032026	0.81[EUR][1000 genomes]
rs11032043	0.82[EUR][1000 genomes]
rs11032060	1.00[JPT][hapmap]
rs11032072	1.00[JPT][hapmap]
rs11032074	1.00[JPT][hapmap]
rs11032076	1.00[JPT][hapmap]
rs1396994	1.00[JPT][hapmap]
rs174747	1.00[JPT][hapmap]
rs197702	0.80[EUR][1000 genomes]
rs197703	1.00[JPT][hapmap]
rs197706	0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs197708	0.80[EUR][1000 genomes]
rs197711	0.80[EUR][1000 genomes]
rs2143572	0.84[EUR][1000 genomes]
rs2419772	0.84[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2419773	0.84[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2664693	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2746036	0.83[CEU][hapmap]
rs2746037	1.00[JPT][hapmap]
rs2786800	1.00[JPT][hapmap]
rs2900979	0.80[EUR][1000 genomes]
rs2900980	0.80[EUR][1000 genomes]
rs34991296	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755451	0.83[EUR][1000 genomes]
rs4755476	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs4756328	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756373	1.00[JPT][hapmap]
rs4756385	1.00[JPT][hapmap]
rs6484610	1.00[JPT][hapmap]
rs652963	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs7101848	0.81[EUR][1000 genomes]
rs7104368	1.00[JPT][hapmap]
rs7113870	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124151	0.84[EUR][1000 genomes]
rs7128509	1.00[JPT][hapmap]
rs7395190	1.00[JPT][hapmap]
rs7481878	1.00[JPT][hapmap]
rs761284	1.00[JPT][hapmap]
rs761285	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7931061	0.83[EUR][1000 genomes]
rs7935374	0.85[EUR][1000 genomes]
rs7944318	1.00[JPT][hapmap]
rs7950261	0.84[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9943506	0.94[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4755455	PRRG4	Cis_1M	lymphoblastoid	RTeQTL
rs4755455	C11orf46	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32900800-32906200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:32903200-32903400	Enhancers	NHEK	skin

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