Variant report

Variant	rs11032076
Chromosome Location	chr11:32996805-32996806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32949447..32951560-chr11:32996072..32998442,2	K562	blood:
2	chr11:32996304..32999169-chr11:33001880..33003438,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10454479	0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs10767973	0.94[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767977	1.00[ASN][1000 genomes]
rs10835991	1.00[ASN][1000 genomes]
rs10835996	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10835997	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11031978	1.00[JPT][hapmap]
rs11032017	1.00[JPT][hapmap]
rs11032026	1.00[AFR][1000 genomes]
rs11032058	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032060	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032071	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11032072	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032073	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032074	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12224002	1.00[ASN][1000 genomes]
rs174747	1.00[JPT][hapmap]
rs197703	1.00[JPT][hapmap]
rs197706	1.00[JPT][hapmap]
rs2092657	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143572	1.00[AFR][1000 genomes]
rs2249555	1.00[ASN][1000 genomes]
rs2419772	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs2419773	1.00[JPT][hapmap]
rs2419783	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664693	1.00[JPT][hapmap]
rs2746036	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746037	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2786800	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35529733	1.00[AFR][1000 genomes]
rs4755476	0.94[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756355	1.00[ASN][1000 genomes]
rs4756373	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4756385	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs589450	1.00[ASN][1000 genomes]
rs602126	1.00[ASN][1000 genomes]
rs6484610	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs652963	0.94[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7104368	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7108574	1.00[ASN][1000 genomes]
rs7109890	1.00[ASN][1000 genomes]
rs7113870	1.00[AFR][1000 genomes]
rs7118330	1.00[ASN][1000 genomes]
rs7124151	1.00[AFR][1000 genomes]
rs7128509	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73474587	1.00[ASN][1000 genomes]
rs7395190	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7481878	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs761284	1.00[JPT][hapmap]
rs761285	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs7935374	1.00[AFR][1000 genomes]
rs7941237	1.00[ASN][1000 genomes]
rs7944318	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7950261	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs9919531	1.00[ASN][1000 genomes]
rs9943506	0.83[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv1040484	chr11:32951066-33093204	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1046198	chr11:32954100-33075142	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	esv2762904	chr11:32969258-33586535	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
9	nsv1041149	chr11:32981164-33496670	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv1053823	chr11:32981164-33533356	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
11	nsv897194	chr11:32993887-33471804	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11032076	PRRG4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32955600-33000800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:32955600-33003800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:32968200-32998800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:32968200-33002000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:32968200-33003000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:32968800-33002000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:32969600-32997000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:32970200-33001800	Weak transcription	Psoas Muscle	Psoas
9	chr11:32971800-32999600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:32973000-33003200	Weak transcription	NHLF	lung
11	chr11:32973200-33008600	Weak transcription	HSMMtube	muscle
12	chr11:32975200-33000600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:32975200-33000600	Strong transcription	Hela-S3	cervix
14	chr11:32975200-33001800	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:32975400-33000600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:32975400-33000800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:32975600-33000600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:32975600-33002200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:32975800-33001000	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr11:32975800-33001800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:32975800-33002000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:32975800-33002000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:32975800-33003000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:32976200-33000200	Weak transcription	Aorta	Aorta
25	chr11:32978200-33000400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr11:32978600-33000200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:32978600-33002000	Weak transcription	Colonic Mucosa	Colon
28	chr11:32979600-33009400	Weak transcription	Stomach Mucosa	stomach
29	chr11:32980200-32998000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:32980200-33002000	Weak transcription	Pancreas	Pancrea
31	chr11:32980200-33002000	Weak transcription	Spleen	Spleen
32	chr11:32980800-32997000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:32980800-32997000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:32980800-32997200	Weak transcription	Brain Angular Gyrus	brain
35	chr11:32980800-33003000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:32980800-33005400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:32981200-32997000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:32981200-32997200	Weak transcription	Colon Smooth Muscle	Colon
39	chr11:32981600-33003400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr11:32982600-33000600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr11:32983000-32997200	Weak transcription	K562	blood
42	chr11:32983600-32998600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:32985800-32997200	Weak transcription	Lung	lung
44	chr11:32987000-33002200	Weak transcription	Osteobl	bone
45	chr11:32987000-33003000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:32987400-32997000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:32987800-32999600	Weak transcription	Right Ventricle	heart
48	chr11:32988800-33002200	Weak transcription	Brain Germinal Matrix	brain
49	chr11:32989800-33000800	Strong transcription	Dnd41	blood
50	chr11:32990200-33001000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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