Variant report

Variant	rs4755451
Chromosome Location	chr11:32882859-32882860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32873372..32875504-chr11:32882412..32884075,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11031975	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11031978	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11031981	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11031994	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11031999	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11032000	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11032017	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11032026	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11032043	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs197702	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs197703	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs197706	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs197708	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs197711	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2143572	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2419772	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2419773	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2664693	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2900979	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2900980	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34991296	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4755455	0.83[EUR][1000 genomes]
rs4756328	0.83[EUR][1000 genomes]
rs7101848	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7109323	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7113870	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7124151	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs761285	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7931061	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7935374	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7950261	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9943506	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
8	nsv897191	chr11:32805169-32903263	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv897192	chr11:32828760-32903263	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv897193	chr11:32838288-32903263	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4755451	PRRG4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32878000-32883400	Weak transcription	Liver	Liver
2	chr11:32882800-32884600	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links