Variant report

Variant	rs11031975
Chromosome Location	chr11:32798031-32798032
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32797795..32799426-chr11:32913652..32916468,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11031888	1.00[AFR][1000 genomes]
rs11031889	1.00[AFR][1000 genomes]
rs11031939	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11031949	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11031978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031981	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031994	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031999	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032000	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032017	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032026	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11032043	0.83[EUR][1000 genomes]
rs174747	1.00[ASN][1000 genomes]
rs197702	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs197703	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs197706	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs197708	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs197711	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143572	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2419772	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2419773	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2664693	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900979	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2900980	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34991296	0.82[EUR][1000 genomes]
rs4755378	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4755451	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6484603	1.00[ASN][1000 genomes]
rs7101848	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7113870	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7114137	1.00[ASN][1000 genomes]
rs7124151	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs761285	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931061	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7950261	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9943506	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11031975	PRRG4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32796600-32798400	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:32796800-32798200	Active TSS	GM12878-XiMat	blood
3	chr11:32797200-32798200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:32797200-32798200	Enhancers	Liver	Liver
5	chr11:32797600-32798200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr11:32797600-32798200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr11:32798000-32798400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:32798000-32798400	Enhancers	Dnd41	blood

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